Recognize sample#contig paths in GFA to GBWTGraph #4190
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Changelog Entry
To be copied to the draft changelog by merger:
sample#contigcorrectly.Description
Function
get_best_gbwtgraph_gfa_parsing_parameters()was missing name patternsample#contig, which is sometimes used for reference paths stored as P-lines. This PR adds the pattern. When there are no W-lines in the GFA, paths with a name matching that pattern will be parsed as haplotype paths with no haplotype/phase number. They can be promoted to reference paths using tagRSin the header.This resolves #4110.