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842 Open 1,262 Closed
842 Open 1,262 Closed
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Issues list

VG autoindex does not work for gfa walks when the SeqStart or SeqEnd fields are equal to "*"
#4517 opened Feb 3, 2025 by mir-cat
Tag "transcript_id" not found in attributes when in index with vg
#4515 opened Jan 31, 2025 by ld9866
1
Extract a single chromosome or a region of the chromosome from GBZ
#4511 opened Jan 28, 2025 by jikhashkya
2
Converting multiple sequence alignments to variation graphs
#4510 opened Jan 28, 2025 by danimelsz
vg autoindex does not respect memory limitation
#4509 opened Jan 28, 2025 by FelixMoelder
3
Release vg v1.64.0
#4507 opened Jan 27, 2025 by adamnovak
28 tasks
v1.64.0
vg call output: some negative qualities and overlapping structural variants
#4500 opened Jan 20, 2025 by MarionPerrier
I try to use vg map + DeepVariant workflow. I work on whole human genome(GRCh38) and only test on chr20 with 2 ways, but get totally difference result.
#4486 opened Dec 27, 2024 by pioneer-pi
1
I wonder the process of sujecting GAM to BAM.
#4485 opened Dec 24, 2024 by pioneer-pi
1
ERROR: Signal 6 occurred. VG has crashed.
#4482 opened Dec 19, 2024 by shin0727
1
Unable to clone vg recursively
#4480 opened Dec 17, 2024 by tsnorri
5
Release vg v1.63.0
#4479 opened Dec 16, 2024 by adamnovak
24 of 28 tasks
v1.63.0
1
How to classify SV from a graph constructed directly from aligned de novo assemblies
#4476 opened Dec 10, 2024 by dudududu12138
vg call issues
#4475 opened Dec 10, 2024 by asylvz
7
What is the proper cutoff of GQ in the output vcf file ?
#4473 opened Dec 9, 2024 by dudududu12138
I have a question about vg giraffe
#4472 opened Dec 7, 2024 by pioneer-pi
5
What's the difference of the two parameters (-A and -a) in vg call ?
#4469 opened Dec 6, 2024 by dudududu12138
2
Folowing VG-RDF,-the-Ensembl-bacteria-E.-coli-genome-hack-attack
#4467 opened Dec 4, 2024 by buchanri
vg pack error
#4463 opened Dec 2, 2024 by sdws1983
4
perform variant detection on second-generation sequencing data based on the pan-genome constructed using Minigraph-Cactus
#4462 opened Nov 30, 2024 by C-YONG
vg Giraffe
#4456 opened Nov 26, 2024 by pengyan19
1
Detect when Protobuf streams start with other file types' magic numbers
#4449 opened Nov 20, 2024 by adamnovak
Efficient HandleGraph to JSON conversion
#4448 opened Nov 19, 2024 by adamnovak
END and POS do not agree
#4447 opened Nov 18, 2024 by asylvz
vg call strips path/contig info from vcf
#4445 opened Nov 14, 2024 by CormacKinsella
4
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