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Fix test dependency list
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@adamnovak
adamnovak authored May 17, 2024
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7 changes: 4 additions & 3 deletions README.md
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Expand Up @@ -65,9 +65,10 @@ First, obtain the repo and its submodules:
#### Linux: Install Dependencies

Then, install VG's dependencies. You'll need the protobuf and jansson development libraries installed, and to run the tests you will need:
* `jq`, `bc`, `rs`, and `parallel`
* `hexdump` and `column` from `bsdmainutils`
* [`npm` for testing documentation examples](https://github.com/anko/txm)).
* `jq`, `bc`, `rs`, and `parallel`
* `hexdump` and `column` from `bsdmainutils`
* [`npm` for testing documentation examples](https://github.com/anko/txm)).

On Ubuntu, you should be able to do:

make get-deps
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vg CI tests complete for branch document-install. View the full report here.

0 tests passed, 16 tests failed and 0 tests skipped in 519 seconds

Failed tests:

  • test_sim_chr21_snp1kg (31 seconds)
  • test_full_brca2_cactus (33 seconds)
  • test_full_brca2_primary (31 seconds)
  • test_full_brca2_snp1kg (32 seconds)
  • test_map_brca1_cactus (30 seconds)
  • test_map_brca1_primary (31 seconds)
  • test_map_brca1_snp1kg (30 seconds)
  • test_map_brca1_snp1kg_mpmap (31 seconds)
  • test_map_mhc_primary (31 seconds)
  • test_map_mhc_snp1kg (32 seconds)
  • test_sim_mhc_cactus (29 seconds)
  • test_sim_mhc_snp1kg (27 seconds)
  • test_sim_mhc_snp1kg_mpmap (26 seconds)
  • test_call_chr21_snp1kg (30 seconds)
  • test_sim_chr21_snp1kg_trained (38 seconds)
  • test_sim_yeast_cactus (36 seconds)

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