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Ulelab

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  1. clipplotr Public

    A tool to facilitate comparative visualisation of CLIP data

    R 15 5

  2. ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    Python 26 12

  3. clippy Public

    A wrapper around scipy "find_peaks" function to enable peak calling of CLIP data.

    Python 2

  4. peka Public

    Find motifs enriched around prominent crosslinks

    Python 5 2

  5. iCount-Mini Public

    Forked from genialis/iCount

    iCount, protein-RNA interaction analytics

    Python 1

Repositories

Showing 10 of 29 repositories
  • PRMT-APA Public
    HTML 0 0 0 0 Updated Mar 20, 2025
  • rna_maps Public

    Plot CLIP crosslinks around regulated exons to study position-dependent impact on pre-mRNA splicing.

    Python 0 0 0 0 Updated Mar 19, 2025
  • DRIMseq_script_Ultanir Public

    DRIMseq script used for APA analysis in Ultanir paper

    R 0 0 0 0 Updated Mar 18, 2025
  • gtf-ops Public

    Filtering GENCODE or ENSEMBLE annotation in GTF format. Annotating missing regions in iCount genomic segmentation.

    Python 0 GPL-3.0 0 0 0 Updated Mar 12, 2025
  • nf-quantseq Public
    Nextflow 1 MIT 0 0 0 Updated Dec 12, 2024
  • remove_spaces_in_fastq_headers Public

    remove spaces in fastq headers that can cause issues with STAR mapping followed by UMI duplicate removal

    Python 0 0 0 0 Updated Nov 29, 2024
  • splicelogos Public

    generate human 5'ss and 3'ss logos

    R 0 0 0 0 Updated Sep 9, 2024
  • nf-aws-test Public

    A short pipeline to test nf AWS batch performance

    Nextflow 0 0 0 0 Updated Jul 29, 2024
  • peka Public

    Find motifs enriched around prominent crosslinks

    Python 5 GPL-3.0 2 0 0 Updated Apr 29, 2024
  • ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    Python 26 12 20 0 Updated Apr 23, 2024
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