Prepare release 1.2.2

genepi · Oct 2, 2020 · 0dfa514 · 0dfa514
1 parent 154147d
commit 0dfa514
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Showing 4 changed files with 6 additions and 6 deletions.
diff --git a/README.md b/README.md
@@ -9,8 +9,8 @@ Haplocheck accepts BAM/CRAM files **OR** VCF files (generated with [mutserve](ht
 
 ## Install Haplocheck Workflow 
 
-    curl -s install.cloudgene.io | bash 
-    ./cloudgene install https://github.com/genepi/haplocheck/releases/download/v1.2.1/haplocheck.zip 
+    curl -s install.cloudgene.io | bash -s 2.3.3
+    ./cloudgene install https://github.com/genepi/haplocheck/releases/download/v1.2.2/haplocheck.zip 
 
 
 ## Run Haplocheck Workflow 
@@ -20,7 +20,7 @@ Calculate contamination status of 1000 Genomes Phase3 samples (n = 2,504):
 wget https://github.com/genepi/haplocheck/raw/master/test-data/contamination/1000G/all/1000g-nobaq.vcf.gz 
 
 #Run haplocheck
-./cloudgene run haplocheck --files 1000g-nobaq.vcf.gz --output results  
+./cloudgene run haplocheck@1.2.2 --files 1000g-nobaq.vcf.gz --output results  
 
 #Open results in Browser
 firefox results/report/report.html

diff --git a/files/cloudgene.yaml b/files/cloudgene.yaml
@@ -1,7 +1,7 @@
 name: Haplocheck
 id: haplocheck
 description: A fast method to detect sample contamination in mtDNA and WGS data. <br> To learn more about haplocheck, please have a look at <a href="https://mitoverse.readthedocs.io/en/latest/">https://mitoverse.readthedocs.io/en/latest/</a>.
-version: 1.2.1
+version: 1.2.2
 workflow:
 
   steps:

diff --git a/files/haplocheck.html b/files/haplocheck.html
@@ -48,7 +48,7 @@
 
 <body>
 	<nav class="navbar navbar-dark fixed-top bg-dark flex-md-nowrap p-0 shadow">
-		<a class="navbar-brand col-sm-3 col-md-2 mr-0" href="#">Haplocheck Report (v1.2.1)</a>
+		<a class="navbar-brand col-sm-3 col-md-2 mr-0" href="#">Haplocheck Report (v1.2.2)</a>
 	</nav>
 
 	<div class="container-fluid">

diff --git a/pom.xml b/pom.xml
@@ -5,7 +5,7 @@
 
 	<groupId>genepi</groupId>
 	<artifactId>haplocheck</artifactId>
-	<version>1.2.1</version>
+	<version>1.2.2</version>
 	<packaging>jar</packaging>
 
 	<name>haplocheck</name>