Changelog

0.1.3 / 2019-06-02

moseq2-extract

• Cleanup of h5 file structure
• h5 files now include more useful metadata
• Added support for sorting ROIs
• Added the copy-slice utility
• Added support for extraction directly from tarballs
• Fixed statsmodel incompatibility with new scipy

moseq2-pca

• Upgraded joblib
• Simplified installation
• Fixed timestamp bug #43

moseq2-model

• Upgraded joblib
• Updated regularization and normalization options
• Clean up setup.py

moseq2-viz

• Fixed jitter issue with crowd movies
• Fixed flickering in crowd movies
• Numerous feature improvements

moseq2-batch

• Numerous feature improvements

0.1.2 / 2019-01-14

moseq2-extract

• Added hole-filling to ROI detection
• Switched to new OpenCV 4 API (note that you must re-run pip install so that the correct version of OpenCV is used)

moseq2-pca

• Addressed #45

moseq2-model

• Added support for parallel processing

moseq2-viz

• Added new distance metrics
• Addressed #40
• Addressed #36
• Addressed #32

0.1.1 / 2018-10-04

moseq2-extract

• Fixed packaging
• Added ffv1 conversion for data compression
• Made tracking more robust per issue #42
• Made initialization of tracking model more robust
• Added gradient filtering for ROI detection in noisy environments

moseq2-pca

• Fixed packaging
• Fix for slurm initialization
• Added bash completion scripts
• Addressed #38
• Now prints more useful information on Dask initialization

moseq2-model

• By default kappa is set to the number of frames
• Added bash completion

moseq2-viz

• Added ability to center and rotate mouse for crowd movies
• Fixed issue with feedback paths
• Fixed packaging
• Added information metrics per #28
• Added graphviz layout algorithms
• Added lots of options for laying out transition graphs
• Addressed #33

moseq2-batch

• Fixed packaging
• Added ffv1 conversion support
• Pinned joblib version
• Updated ruamel.yaml
• Cleaned up yaml status reports for batch jobs
• Addressed issue #9

0.1.0 / 2018-08-20

First release!

moseq2-extract

• More explicit metadata for extracted data

moseq2-pca

• Cleaned up handling of Dask computations for PCA

moseq2-viz

• Lots of features added to moseq2-viz
• Added ability to visualize differences between graphs
• Added scalar visualization
• Added better handling of add-group
• Updated format of moseq2-index.yaml note that this is a breaking change, users of older versions will need to regenerate the index file
• Commented important functions to use in notebooks