Reworked settings and run configuration #32
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Implement option to stop run early by @mhovd
No cache c1
Other files use "id" as the subject identifier, except for the "obs.csv"-file.
PS: Code may need refactoring
TODO: Make the field optional, then check if it exists instead of checking for an empty string.
Optimization routines and the new simulator with covariate support
Formatting of time to correct unit is now in a function
Added new chunk with options (WIP). Tables are now used instead of paragraphs for better control of layout. Constraints now (mostly) use Percentage instead of fixed widths for better scaling to smaller windows.
Implements plot logic
Basic workflow to build and test
Renaming Data to Settings, which is more intuitive
Easier debugging
Random parameters are now sorted alphabetically. Additionally, a panic hook was added to the TUI.
If the config.toml includes fields which are not defined in the structs in settings.rs, there will be an error.
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Tested and Working |
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Settings are now read from the
config.tomlfile usingconfig.Additionally, it can be overrun with environmental variables.
For example, if you have
You may set
NPCORE_CONFIG_TUI=falseas an environmental variable, which will be respected.Additionally, the settings used for the run will be saved to file in JSON-format.
Needs some testing before final implementation.