Reworked settings and run configuration#32

Merged

Siel merged 426 commits intomainfrom config

Jan 23, 2024

+340-410

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Commits on Apr 13, 2023

Commits on Apr 15, 2023

Initial testing, seems to work
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Faster!
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Commits on Apr 17, 2023

Commits on Apr 20, 2023

Merge pull request #4 from LAPKB/no_cache_c1
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Commits on Apr 24, 2023

optim
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Commits on Apr 26, 2023

Replaced sub_num with id for consistency
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Added elapsed time to the TUI
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Timer now stops on convergence
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Convergence is displayed in the TUI
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Added more flexible method for the "stop text"
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GamLam working as it is in the Fortran code
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Commits on Apr 28, 2023

Write actual ID instead of index
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Commits on May 8, 2023

Commits on May 17, 2023

Merge pull request #7 from LAPKB/optim
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Commits on May 28, 2023

Merge branch 'tui' into optim_tui
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Moved formatting logic to function
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Commits on May 29, 2023

UI overhaul
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Plot -2LL over cycle
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Create rust.yml
mhovd
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Update README.md
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Simulator -> Predict
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Update rust.yml
mhovd
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Workflow badge - build
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Update rust.yml
mhovd
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Merge pull request #8 from LAPKB/optim_tui
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Merge pull request #5 from LAPKB/scenario_id
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Commits on May 30, 2023

Commits on Jun 6, 2023

Commits on Jun 19, 2023

going back to the previous ipm
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Commits on Jun 20, 2023

Commits on Jun 21, 2023

from multiplicative to proportional, to be consistent with Pmetrics
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Commits on Jun 27, 2023

Commits on Jun 30, 2023

Update README.md
mhovd
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Commits on Jul 11, 2023

Add headers to theta.csv
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Reads prior distributions with headers
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Added prior for bimodal_ke
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Merge pull request #10 from LAPKB/theta_headers
mhovd
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Delete bke_prior.csv
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Commits on Jul 13, 2023

Improvements to plot in TUI
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Updated stop text and plot decimals
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Update outdated packages
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Commits on Jul 14, 2023

Added check for negative SD
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Commits on Jul 17, 2023

Upgrade ratatui to 0.22.0
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Commits on Jul 19, 2023

Added settings to TUI
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Commits on Jul 24, 2023

new stop criteria and fix on the examples
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Commits on Jul 25, 2023

Preserve order in TOML
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Improve error handling for stopfile
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Commits on Aug 1, 2023

Remove break for objf decrease
mhovd
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Refactor output file generation
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Update npag.rs
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Commits on Aug 8, 2023

Implement adaptive stepsize
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Commits on Aug 9, 2023

Commits on Aug 15, 2023

Commits on Aug 23, 2023

Commits on Aug 28, 2023

Commits on Aug 29, 2023

Commits on Sep 12, 2023

Made all fields in Event public
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Typo
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Draft: forwarding results
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new struct to handle the cycle information
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cyclelog is part of the NPresult
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Removed AppState in favor of NPCycle
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planning migration to faer_rs. added a new example of a QR decomposition using faer
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Commits on Sep 14, 2023

Commits on Sep 15, 2023

TUI-related changes
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Methods for NPResult
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Commits on Sep 18, 2023

on vori
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Commits on Sep 24, 2023

Commits on Sep 27, 2023

Dependencies updated
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Commits on Sep 29, 2023

Commits on Oct 1, 2023

working on the documentation
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Merge branch 'fix' into main
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New algorithm and dispatch changes
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Commits on Oct 2, 2023

Commits on Oct 3, 2023

new indirection and project structure
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moved the logger to its own module
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Update README.md
mhovd
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WIP
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Commits on Oct 5, 2023

Commits on Oct 6, 2023

Commits on Oct 8, 2023

Setting for more predictions
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Commits on Oct 9, 2023

Simulate to time after dose
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Commits on Oct 10, 2023

Simulate to time after dose

mhovd
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Markus Herberg Hovd
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Commits on Oct 19, 2023

Commits on Oct 26, 2023

Move datafile read from algorithms to entrypoint
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Update entrypoints.rs
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Revert "Update entrypoints.rs"
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New entrypoint with data argument
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Fix start_with_data entrypoint
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Update prelude and provide example for bimodal_ke
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Commits on Nov 4, 2023

Merge branch 'idelta' of https://github.com/LAPKB/NPcore into idelta
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Merge remote-tracking branch 'origin/idelta' into main
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Update dependencies
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Restore bimodal_ke
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Commits on Nov 5, 2023

Use tracing for logging
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Format timestamp compactly
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Transition to tracing
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Merge remote-tracking branch 'origin/tracing' into main
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Use tracing in entrypoints
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Move UI code to components
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Prototype reading app_history
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Commits on Nov 8, 2023

Remove black background
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Working prototype of tabs
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Commits on Nov 9, 2023

Working on tabbed content
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Plot implemented for tabs
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Added parameter boundaries tab
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Refactor communcation to TUI
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Minor cleanup
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Commits on Nov 11, 2023

Working on getting logs to TUI (BROKEN)
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Working example
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Nicer formatting
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Added more logging
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Minor adjustments
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Commits on Nov 13, 2023

Minor change of log text
Markus Hovd
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Convert desired log level from settings to lowercase
Markus Hovd
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Merge pull request #25 from LAPKB/tui-logs
mhovd
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Temporarily exclude non-working models and files
Markus Hovd
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Commits on Nov 15, 2023

Update README.md
mhovd
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Commits on Nov 23, 2023

Lag re-implemented
Siel
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Commits on Nov 27, 2023

Commits on Nov 28, 2023

Update dependencies + housekeeping
mhovd
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Commits on Nov 30, 2023

Update simulator for more granular output
Markus Herberg Hovd
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Clean main entrypoint
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Simulation entrypoint now works as intended
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Some documentation for entrypoints
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Update lib.rs
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Commits on Dec 7, 2023

Document NPAG, log OBJF, and fix entrypoint
mhovd
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Commits on Dec 19, 2023

Add more DEBUG-level logs
mhovd
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Commits on Dec 25, 2023

Update TUI to use ratatui 0.25.0
mhovd
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Commits on Dec 27, 2023

Reduce cache size to 1000 support points per scenario
mhovd
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Commits on Dec 29, 2023

merging with private repo
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Housekeeping
Markus Herberg Hovd
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Update ratatui to 25.0
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Documentation
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Setup benchmarks
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Improve TUI program flow
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Commits on Dec 30, 2023

Update alternative entrypoint
Markus Herberg Hovd
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Rename settings object from Data to Settings
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Documentation
Markus Herberg Hovd
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Update benchmark function name
Markus Herberg Hovd
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Version bump and format
Markus Herberg Hovd
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Add crates.io badge
mhovd
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Commits on Jan 2, 2024

Working on new config interface
Markus Herberg Hovd
committed

Commits on Jan 14, 2024

WIP
mhovd
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Commits on Jan 15, 2024

Working example
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Commits on Jan 16, 2024

Commits on Jan 19, 2024

Delete iohexol_data_fix.csv

Markus Hovd
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Siel
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Working on new config interface

Markus Herberg Hovd
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Siel
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WIP

mhovd
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Siel
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Working example

Markus Herberg Hovd
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Siel
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Add validators and documentation to settings

mhovd
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Siel
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Documentation

mhovd
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Siel
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Documentation

mhovd
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Format

mhovd
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merge with main
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