new 2 cons

yangao07 · Feb 9, 2025 · 994904a · 994904a
1 parent c8d6f99
commit 994904a
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Showing 3 changed files with 632 additions and 278 deletions.
diff --git a/src/abpoa_align.c b/src/abpoa_align.c
@@ -152,7 +152,7 @@ void abpoa_post_set_para(abpoa_para_t *abpt) {
     abpoa_set_gap_mode(abpt);
     if (abpt->out_msa || abpt->out_gfa || abpt->max_n_cons > 1 || abpt->cons_algrm == ABPOA_MF) {
         abpt->use_read_ids = 1;
-        if (abpt->out_msa || abpt->out_gfa) set_65536_table();
+        if (abpt->out_msa || abpt->out_gfa || abpt->max_n_cons) set_65536_table();
         if (abpt->max_n_cons > 1 || abpt->cons_algrm == ABPOA_MF) set_bit_table16();
     }
     if (abpt->align_mode == ABPOA_LOCAL_MODE) abpt->wb = -1;