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iotaa v1.1.0 update #687

Merged
merged 62 commits into from
Jan 28, 2025
Merged

iotaa v1.1.0 update #687

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f305dd6
WIP
maddenp-noaa Nov 22, 2024
0ac480a
Linter passes
maddenp-noaa Nov 22, 2024
4c08335
Fix recipe/channels
maddenp-noaa Nov 22, 2024
efa1ee2
73 unit-test failures
maddenp-noaa Nov 22, 2024
58edac2
68 unit-test failures
maddenp-noaa Nov 22, 2024
6eba6c4
WIP
maddenp-noaa Nov 22, 2024
50242df
51 unit-test failures
maddenp-noaa Nov 22, 2024
369c8e8
oktask -> ready_task
maddenp-noaa Nov 22, 2024
2feee28
42 unit-test failures
maddenp-noaa Nov 22, 2024
d5e9d68
36 unit-test failures
maddenp-noaa Nov 22, 2024
cc162b2
26 unit-test failures
maddenp-noaa Nov 22, 2024
bc812b4
23 unit-test failures
maddenp-noaa Nov 22, 2024
00ac7fb
WIP
maddenp-noaa Nov 22, 2024
8eecf7d
2 unit-test failures
maddenp-noaa Nov 22, 2024
730b5dc
0 unit-test failures
maddenp-noaa Nov 22, 2024
caf1da8
Update docs
maddenp-noaa Nov 22, 2024
aa91ca0
Make dry_run args explicit
maddenp-noaa Nov 22, 2024
ab5db9e
Update docs
maddenp-noaa Nov 23, 2024
9fbebe0
Merge branch 'main' into iotaa-update
maddenp-noaa Nov 25, 2024
ba72a80
Merge branch 'main' into iotaa-update
maddenp-noaa Nov 27, 2024
9cbcce0
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 2, 2024
397e24d
Fix test
maddenp-noaa Dec 3, 2024
f36bbbd
Simplify
maddenp-noaa Dec 3, 2024
54c8593
Remove dry_run from fs.py formal args
maddenp-noaa Dec 3, 2024
1d305d0
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 3, 2024
6044cac
Update test package pins
maddenp-noaa Dec 3, 2024
81ab7af
Changes due to pylint plugin
maddenp-noaa Dec 4, 2024
2eba4cf
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 4, 2024
b2875b5
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 4, 2024
d3fd7c6
Remove unneeded pylint suppressors
maddenp-noaa Dec 5, 2024
5e06290
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 10, 2024
f4d9e9d
Fixes around dry_run
maddenp-noaa Dec 10, 2024
5388de7
Tests pass
maddenp-noaa Dec 10, 2024
5b849ab
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 10, 2024
0191124
Tests pass
maddenp-noaa Dec 10, 2024
6c731d8
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 11, 2024
7593e65
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 12, 2024
dabbdeb
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 17, 2024
9e486cf
Tests pass
maddenp-noaa Dec 17, 2024
40aa27f
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 18, 2024
7df7fd2
Merge branch 'main' into iotaa-update
maddenp-noaa Dec 19, 2024
cad9c60
'UW schema-validation' -> 'schema-validation'
maddenp-noaa Dec 19, 2024
44e3ae8
Merge branch 'main' into iotaa-update [skip ci]
maddenp-noaa Dec 19, 2024
3dde744
Simplify
maddenp-noaa Dec 31, 2024
16aea23
Merge branch 'main' into iotaa-update [skip ci]
maddenp-noaa Jan 7, 2025
2ba1559
Merge branch 'main' into iotaa-update [skip ci]
maddenp-noaa Jan 13, 2025
b6b9091
Merge branch 'main' into iotaa-update
maddenp-noaa Jan 16, 2025
557a366
_AssetsT -> Node
maddenp-noaa Jan 16, 2025
713ae1c
Update mypy version
maddenp-noaa Jan 16, 2025
cecf9e7
Doc update
maddenp-noaa Jan 18, 2025
089da2e
Fix test-nb
maddenp-noaa Jan 18, 2025
77a0e2c
Update notebook
maddenp-noaa Jan 18, 2025
aaeac09
Try setting user-agent string
maddenp-noaa Jan 19, 2025
1f89e4f
Make iotaa pin flexible
maddenp-noaa Jan 21, 2025
b24fda7
Update meta.json
maddenp-noaa Jan 21, 2025
cc52103
Use iotaa >=1.1.0 [skip ci]
maddenp-noaa Jan 21, 2025
29a1a7d
Commit to trigger PR checks
maddenp-noaa Jan 24, 2025
11598a5
Revert "Commit to trigger PR checks"
maddenp-noaa Jan 24, 2025
87459ff
Remove gnu.org hyperlink that continually fails checks
maddenp-noaa Jan 24, 2025
4b4171a
Merge branch 'main' into iotaa-update
maddenp-noaa Jan 28, 2025
25a99ea
Update meta.*
maddenp-noaa Jan 28, 2025
d2f5542
Merge branch 'main' into iotaa-update
maddenp-noaa Jan 28, 2025
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1 change: 1 addition & 0 deletions docs/conf.py
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Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@
("py:class", "Path"),
("py:class", "f90nml.Namelist"),
("py:class", "iotaa.Asset"),
("py:class", "iotaa.Node"),
]
numfig = True
numfig_format = {"figure": "Figure %s"}
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11 changes: 4 additions & 7 deletions docs/sections/user_guide/cli/tools/execute/alt-schema.out
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@@ -1,7 +1,4 @@
[2024-08-26T23:03:41] INFO 0 schema-validation errors found in rand config
[2024-08-26T23:03:41] INFO rand Random-integer file: Initial state: Not Ready
[2024-08-26T23:03:41] INFO rand Random-integer file: Checking requirements
[2024-08-26T23:03:41] INFO rand Random-integer file: Requirement(s) ready
[2024-08-26T23:03:41] INFO rand Random-integer file: Executing
[2024-08-26T23:03:41] INFO rand Random-integer file: Final state: Ready
Random integer is 14
[2024-11-22T23:09:14] INFO 0 schema-validation errors found in rand config
[2024-11-22T23:09:15] INFO rand Random-integer file: Executing
[2024-11-22T23:09:16] INFO rand Random-integer file: Ready
maddenp-noaa marked this conversation as resolved.
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Random integer is 5
11 changes: 4 additions & 7 deletions docs/sections/user_guide/cli/tools/execute/execute.out
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@@ -1,7 +1,4 @@
[2024-08-26T23:03:40] INFO 0 schema-validation errors found in rand config
[2024-08-26T23:03:40] INFO rand Random-integer file: Initial state: Not Ready
[2024-08-26T23:03:40] INFO rand Random-integer file: Checking requirements
[2024-08-26T23:03:40] INFO rand Random-integer file: Requirement(s) ready
[2024-08-26T23:03:40] INFO rand Random-integer file: Executing
[2024-08-26T23:03:40] INFO rand Random-integer file: Final state: Ready
Random integer is 80
[2024-11-22T23:09:15] INFO 0 schema-validation errors found in rand config
[2024-11-22T23:09:16] INFO rand Random-integer file: Executing
[2024-11-22T23:09:16] INFO rand Random-integer file: Ready
Random integer is 6
16 changes: 6 additions & 10 deletions docs/sections/user_guide/cli/tools/fs/copy-exec-timedep.out
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@@ -1,13 +1,9 @@
[2024-08-26T23:03:42] INFO Validating config against internal schema: files-to-stage
[2024-08-26T23:03:43] INFO 0 schema-validation errors found in fs config
[2024-08-26T23:03:43] INFO File copies: Initial state: Not Ready
[2024-08-26T23:03:43] INFO File copies: Checking requirements
[2024-08-26T23:03:43] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Initial state: Not Ready
[2024-08-26T23:03:43] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Checking requirements
[2024-08-26T23:03:43] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Requirement(s) ready
[2024-08-26T23:03:43] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Executing
[2024-08-26T23:03:43] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Final state: Ready
[2024-08-26T23:03:43] INFO File copies: Final state: Ready
[2024-11-23T00:30:43] INFO Validating config against internal schema: files-to-stage
[2024-11-23T00:30:43] INFO 0 schema-validation errors found in fs config
[2024-11-23T00:30:44] INFO File src/20240529/12/006/baz: Ready
[2024-11-23T00:30:44] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Executing
[2024-11-23T00:30:44] INFO Copy src/20240529/12/006/baz -> copy-dst-timedep/baz-2024-05-29T18: Ready
[2024-11-23T00:30:44] INFO File copies: Ready

copy-dst-timedep
└── baz-2024-05-29T18
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32 changes: 12 additions & 20 deletions docs/sections/user_guide/cli/tools/fs/copy-exec.out
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@@ -1,23 +1,15 @@
[2024-12-07T01:01:56] INFO Validating config against internal schema: files-to-stage
[2024-12-07T01:01:56] INFO 0 schema-validation errors found in fs config
[2024-12-07T01:01:56] INFO File copies: Initial state: Not Ready
[2024-12-07T01:01:56] INFO File copies: Checking requirements
[2024-12-07T01:01:56] INFO Copy src/foo -> copy-dst/foo: Initial state: Not Ready
[2024-12-07T01:01:56] INFO Copy src/foo -> copy-dst/foo: Checking requirements
[2024-12-07T01:01:56] INFO Copy src/foo -> copy-dst/foo: Requirement(s) ready
[2024-12-07T01:01:56] INFO Copy src/foo -> copy-dst/foo: Executing
[2024-12-07T01:01:56] INFO Copy src/foo -> copy-dst/foo: Final state: Ready
[2024-12-07T01:01:56] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Initial state: Not Ready
[2024-12-07T01:01:56] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Checking requirements
[2024-12-07T01:01:58] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Requirement(s) ready
[2024-12-07T01:01:58] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Executing
[2024-12-07T01:01:58] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Final state: Ready
[2024-12-07T01:01:58] INFO Copy src/bar -> copy-dst/subdir/bar: Initial state: Not Ready
[2024-12-07T01:01:58] INFO Copy src/bar -> copy-dst/subdir/bar: Checking requirements
[2024-12-07T01:01:58] INFO Copy src/bar -> copy-dst/subdir/bar: Requirement(s) ready
[2024-12-07T01:01:58] INFO Copy src/bar -> copy-dst/subdir/bar: Executing
[2024-12-07T01:01:58] INFO Copy src/bar -> copy-dst/subdir/bar: Final state: Ready
[2024-12-07T01:01:58] INFO File copies: Final state: Ready
[2025-01-18T07:29:30] INFO Validating config against internal schema: files-to-stage
[2025-01-18T07:29:30] INFO 0 schema-validation errors found in fs config
[2025-01-18T07:29:32] INFO File src/foo: Ready
[2025-01-18T07:29:33] INFO Remote object https://www.gnu.org/licenses/gpl-3.0.txt: Ready
[2025-01-18T07:29:33] INFO File src/bar: Ready
[2025-01-18T07:29:33] INFO Copy src/foo -> copy-dst/foo: Executing
[2025-01-18T07:29:33] INFO Copy src/foo -> copy-dst/foo: Ready
[2025-01-18T07:29:33] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Executing
[2025-01-18T07:29:33] INFO Copy https://www.gnu.org/licenses/gpl-3.0.txt -> copy-dst/licenses/gpl: Ready
[2025-01-18T07:29:33] INFO Copy src/bar -> copy-dst/subdir/bar: Executing
[2025-01-18T07:29:33] INFO Copy src/bar -> copy-dst/subdir/bar: Ready
[2025-01-18T07:29:33] INFO File copies: Ready

copy-dst
├── foo
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16 changes: 6 additions & 10 deletions docs/sections/user_guide/cli/tools/fs/link-exec-timedep.out
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@@ -1,13 +1,9 @@
[2024-08-26T23:03:41] INFO Validating config against internal schema: files-to-stage
[2024-08-26T23:03:41] INFO 0 schema-validation errors found in fs config
[2024-08-26T23:03:41] INFO File links: Initial state: Not Ready
[2024-08-26T23:03:41] INFO File links: Checking requirements
[2024-08-26T23:03:41] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Initial state: Not Ready
[2024-08-26T23:03:41] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Checking requirements
[2024-08-26T23:03:41] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Requirement(s) ready
[2024-08-26T23:03:41] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Executing
[2024-08-26T23:03:42] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Final state: Ready
[2024-08-26T23:03:42] INFO File links: Final state: Ready
[2024-11-23T00:30:44] INFO Validating config against internal schema: files-to-stage
[2024-11-23T00:30:44] INFO 0 schema-validation errors found in fs config
[2024-11-23T00:30:44] INFO Filesystem item src/20240529/12/006/baz: Ready
[2024-11-23T00:30:44] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Executing
[2024-11-23T00:30:44] INFO Link link-dst-timedep/baz-2024-05-29T18 -> src/20240529/12/006/baz: Ready
[2024-11-23T00:30:44] INFO File links: Ready

link-dst-timedep
└── baz-2024-05-29T18 -> ../src/20240529/12/006/baz
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24 changes: 9 additions & 15 deletions docs/sections/user_guide/cli/tools/fs/link-exec.out
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@@ -1,18 +1,12 @@
[2024-08-26T23:03:42] INFO Validating config against internal schema: files-to-stage
[2024-08-26T23:03:43] INFO 0 schema-validation errors found in fs config
[2024-08-26T23:03:43] INFO File links: Initial state: Not Ready
[2024-08-26T23:03:43] INFO File links: Checking requirements
[2024-08-26T23:03:43] INFO Link link-dst/foo -> src/foo: Initial state: Not Ready
[2024-08-26T23:03:43] INFO Link link-dst/foo -> src/foo: Checking requirements
[2024-08-26T23:03:43] INFO Link link-dst/foo -> src/foo: Requirement(s) ready
[2024-08-26T23:03:43] INFO Link link-dst/foo -> src/foo: Executing
[2024-08-26T23:03:43] INFO Link link-dst/foo -> src/foo: Final state: Ready
[2024-08-26T23:03:43] INFO Link link-dst/subdir/bar -> src/bar: Initial state: Not Ready
[2024-08-26T23:03:43] INFO Link link-dst/subdir/bar -> src/bar: Checking requirements
[2024-08-26T23:03:43] INFO Link link-dst/subdir/bar -> src/bar: Requirement(s) ready
[2024-08-26T23:03:43] INFO Link link-dst/subdir/bar -> src/bar: Executing
[2024-08-26T23:03:43] INFO Link link-dst/subdir/bar -> src/bar: Final state: Ready
[2024-08-26T23:03:43] INFO File links: Final state: Ready
[2024-11-23T00:30:43] INFO Validating config against internal schema: files-to-stage
[2024-11-23T00:30:43] INFO 0 schema-validation errors found in fs config
[2024-11-23T00:30:44] INFO Filesystem item src/foo: Ready
[2024-11-23T00:30:44] INFO Filesystem item src/bar: Ready
[2024-11-23T00:30:44] INFO Link link-dst/foo -> src/foo: Executing
[2024-11-23T00:30:44] INFO Link link-dst/foo -> src/foo: Ready
[2024-11-23T00:30:44] INFO Link link-dst/subdir/bar -> src/bar: Executing
[2024-11-23T00:30:44] INFO Link link-dst/subdir/bar -> src/bar: Ready
[2024-11-23T00:30:44] INFO File links: Ready

link-dst
├── foo -> ../src/foo
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22 changes: 7 additions & 15 deletions docs/sections/user_guide/cli/tools/fs/makedirs-exec-timedep.out
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@@ -1,18 +1,10 @@
[2024-08-26T23:03:46] INFO Validating config against internal schema: makedirs
[2024-08-26T23:03:46] INFO 0 schema-validation errors found in fs config
[2024-08-26T23:03:46] INFO Directories: Initial state: Not Ready
[2024-08-26T23:03:46] INFO Directories: Checking requirements
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Initial state: Not Ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Checking requirements
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Requirement(s) ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Executing
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Final state: Ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Initial state: Not Ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Checking requirements
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Requirement(s) ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Executing
[2024-08-26T23:03:46] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Final state: Ready
[2024-08-26T23:03:46] INFO Directories: Final state: Ready
[2024-11-23T00:30:43] INFO Validating config against internal schema: makedirs
[2024-11-23T00:30:43] INFO 0 schema-validation errors found in fs config
[2024-11-23T00:30:44] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Executing
[2024-11-23T00:30:44] INFO Directory makedirs-parent-timedep/foo/20240529/12/006/bar: Ready
[2024-11-23T00:30:44] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Executing
[2024-11-23T00:30:44] INFO Directory makedirs-parent-timedep/baz/20240529/12/006/qux: Ready
[2024-11-23T00:30:44] INFO Directories: Ready

makedirs-parent-timedep/
├── baz/
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22 changes: 7 additions & 15 deletions docs/sections/user_guide/cli/tools/fs/makedirs-exec.out
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@@ -1,18 +1,10 @@
[2024-08-26T23:03:46] INFO Validating config against internal schema: makedirs
[2024-08-26T23:03:46] INFO 0 schema-validation errors found in fs config
[2024-08-26T23:03:46] INFO Directories: Initial state: Not Ready
[2024-08-26T23:03:46] INFO Directories: Checking requirements
[2024-08-26T23:03:46] INFO Directory makedirs-parent/foo: Initial state: Not Ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent/foo: Checking requirements
[2024-08-26T23:03:46] INFO Directory makedirs-parent/foo: Requirement(s) ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent/foo: Executing
[2024-08-26T23:03:46] INFO Directory makedirs-parent/foo: Final state: Ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent/bar: Initial state: Not Ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent/bar: Checking requirements
[2024-08-26T23:03:46] INFO Directory makedirs-parent/bar: Requirement(s) ready
[2024-08-26T23:03:46] INFO Directory makedirs-parent/bar: Executing
[2024-08-26T23:03:46] INFO Directory makedirs-parent/bar: Final state: Ready
[2024-08-26T23:03:46] INFO Directories: Final state: Ready
[2024-11-23T00:30:43] INFO Validating config against internal schema: makedirs
[2024-11-23T00:30:43] INFO 0 schema-validation errors found in fs config
[2024-11-23T00:30:44] INFO Directory makedirs-parent/foo: Executing
[2024-11-23T00:30:44] INFO Directory makedirs-parent/foo: Ready
[2024-11-23T00:30:44] INFO Directory makedirs-parent/bar: Executing
[2024-11-23T00:30:44] INFO Directory makedirs-parent/bar: Ready
[2024-11-23T00:30:44] INFO Directories: Ready

makedirs-parent/
├── bar/
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