Feat/dev 2412 upgrade flask #375
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- Remove all driver calls in favor of fixtures that call the driver methods. This puts all the driver instances at a single point of failure/success and makes them easy to interchange. - Cleanup multi-line quotes to use double quotes
Re-arranged how things are set up and fixtures are imported/created, to avoid re-creating of database tables. When a database driver is instantiated it automagically goes through the process of creating tables and running through all the migration steps, because the schema version is set to 1 on a new database.
bulk get query was not closing the session properly which caused postgres to lock before the teardown step of the index_driver pytest fixture. This made the tests hang indefinitely. Minor cleanups.
- split schema and data migration into two steps - test only data migration - make index_metadata migration happen before urls_metadata step
- migration_12 is fully sql - add more tests to test migration
feat(GP-13): relax update constraint
- Update migrate_12 to include things beyond did<ff
The migration script just instantiates the index driver with auto_migrate=True. The init function of the driver runs through all the migrations.
- Removed unnecessary semicolons in sql statements. - Removed dead imports/variables/functions. - release_number is None on separation from metadata dict. - Separate list equivalence into separate function. - Remove urls from function signatures. - Remove database index on did (from did+url composite key). - Revert reorder of database columns on index_record_metadata table. - Simplified python dictionary pop with default value. - Replace state and type contains check with equal check. - Fix update function to include release_number updates from metadata dict. - Remove base_version table from test setups. - Add more testing on urls_metadata.
- update hash code duplicated on merge, remove duplicate - split up update test into individual fields
- Make sure the update test checks to see the release number is no longer in the metadata jsonb column of the database.
- more dictionary pops for metadata/release_number - make getting urls metadata more unified across functions
…g tags, have to identify branch name of commit that was tagged - When a new container is built in GitLab, it will tag the same image in 2 formats: branch_name-short_sha and branch_name
…tually looks for one
Feat/dev 1801 gitlab ci
Fix missing modules errors during start up
chore(release): Galileo
chore(sync): master to develop
* add release to nexus * remove command_pre for publish in tox
DEV-1952: Remove pyrsistent from install deps. Also: - Upgrade tox.ini (allowlist_externals vs whitelist_externals and to only require dev-requirements.txt). - Add --add-opens java.base/java.util=ALL-UNNAMED to Java build command for swagger_client. - Add extras_require for dev deps to setup.py - Add installation notes for Mac M2. - Regen dev-reqs.txt (install + extra dev) from setup.py and reqs.txt as constraints.
* fix bug replace to_json() -> json() for response in indexd/blueprint.py * update test config * disable ddtrace in test
* fix travis tests * remove CI_COMMIT_SHORT_SHA * add pyproject.toml and upgrade setuptools_scm * update docker label, update file name VERSION -> VERSION.txt, update build command for docker * use importlib-metadata to get version * install indexd to find version info * allow unshallow to fail
* get version with setuptools_scm * update deps
* fix docker tag in gitlab-ci * install indexd in docker from whl * update travis, gitlab-ci, setup.py, version * reset .travis.yml Dockerfile, update deps, use importlib-metadate for version * use compatible import * fix version bug
* update gitlab-ci, update deps, update setup.py, update tox, update pre-commit version in gitlab, update config for isort * reorganize tests * add config for isort * pyupgrade --py37-plus indexd/**/*py tests/**/*py * upgrade isort
* update docker.sh * update Dockerfile * update gitlab-ci template version * fix docker.sh for travis
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attrs==23.2.0
blinker==1.7.0
cdislogging==1.1.1
certifi==2024.2.2
charset-normalizer==3.3.2
click==8.1.7
coverage==7.4.1
exceptiongroup==1.2.0
Flask==3.0.1
idna==3.6
importlib-metadata==7.0.1
importlib-resources==6.1.1
indexd @ file:///Users/henddher/Documents/github/indexd
iniconfig==2.0.0
itsdangerous==2.1.2
Jinja2==3.1.3
jsonschema==4.21.1
jsonschema-path==0.3.2
jsonschema-spec==0.2.4
jsonschema-specifications==2023.7.1
lazy-object-proxy==1.10.0
MarkupSafe==2.1.5
openapi-schema-validator==0.6.2
openapi-spec-validator==0.7.1
packaging==23.2
pathable==0.4.3
pip==23.0.1
pkgutil_resolve_name==1.3.10
pluggy==1.4.0
psycopg2==2.9.9
pytest==8.0.0
pytest-cov==4.1.0
pytest-flask==1.3.0
PyYAML==6.0.1
referencing==0.30.2
requests==2.31.0
rfc3339-validator==0.1.4
rpds-py==0.17.1
setuptools==56.0.0
six==1.16.0
SQLAlchemy==1.3.24
SQLAlchemy-Utils==0.41.1
tomli==2.0.1
urllib3==2.2.0
Werkzeug==3.0.1
zipp==3.17.0