temp hardcoding of funnel.conf

gen3/bin/kube-setup-gen3-workflow.sh

@@ -6,28 +6,31 @@ setup_funnel_infra() {
   helm repo add ohsu https://ohsu-comp-bio.github.io/helm-charts
   helm repo update ohsu
 
-  # NOTE: to update once Funnel supports per-user bucket credentials
-  cat - > "$secretsFolder/funnel.conf" <<EOM
-AmazonS3:
-  Key: PLACEHOLDER
-  Secret: PLACEHOLDER
-  Disabled: false
+#   # TODO add file below to secrets folder and don't recreate if already exists
+#   # NOTE: to update once Funnel supports per-user bucket credentials
+#   cat - > "$secretsFolder/funnel.conf" <<EOM
+# AmazonS3:
+#   Key: PLACEHOLDER
+#   Secret: PLACEHOLDER
+#   Disabled: false
 
-Kubernetes:
-  Bucket: PLACEHOLDER
-  Region: us-east-1
+# Kubernetes:
+#   Bucket: PLACEHOLDER
+#   Region: us-east-1
 
-Logger:
-  # Logging levels: debug, info, error
-  Level: info
-EOM
+# Logger:
+#   # Logging levels: debug, info, error
+#   Level: info
+# EOM
 
   namespace="$(gen3 db namespace)"
   version="$(g3k_manifest_lookup .versions.funnel)"
   if [ "$version" == "latest" ]; then
-    helm upgrade --install funnel ohsu/funnel --namespace $namespace --values "$secretsFolder/funnel.conf"
+    # helm upgrade --install funnel ohsu/funnel --namespace $namespace --values "$secretsFolder/funnel.conf"
+    helm upgrade --install funnel ohsu/funnel --namespace $namespace --values /home/pauline/funnel.conf
   else
-    helm upgrade --install funnel ohsu/funnel --namespace $namespace --values "$secretsFolder/funnel.conf" --version $version
+    # helm upgrade --install funnel ohsu/funnel --namespace $namespace --values "$secretsFolder/funnel.conf" --version $version
+    helm upgrade --install funnel ohsu/funnel --namespace $namespace --values /home/pauline/funnel.conf --version $version
   fi
 }