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Releases: terrimporter/SCVURL_rbcL_metabarcode_pipeline

SCVURL v1.0.4

07 May 02:49
@terrimporter terrimporter
v1.0.4
4215d45
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SCVURL v1.0.4 Latest
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New update to activate Zenodo DOI.

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SCVURL v1.0.3

18 Jun 21:21
@terrimporter terrimporter
v1.0.3
a488cbe
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SCVURL v1.0.3

In this version of the pipeline I use --search_exact to create the ESV.table instead of --usearch_global with --id 1.0 because the search_exact method is faster and optimized for finding exact matches.

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SCVURL v1.0.2

24 Feb 20:03
@terrimporter terrimporter
v1.0.2
1cb996a
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SCVURL v1.0.2

Update to provide guidance on choosing a genetic code for green plant chloroplast sequences or diatom chloroplast sequences.

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SCVURL v1.0.1

24 Feb 19:51
@terrimporter terrimporter
v1.0.1
76e5739
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SCVURL v1.0.1

Updated the genetic code to the standard code for green plant chloroplasts.

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SCVURL v1.0.0

14 Jan 21:45
@terrimporter terrimporter
v1.0.0
bffb0c8
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SCVURL v1.0.0

Dataflow and scripts suitable for processing rbcL cpDNA metabarcodes. Taxonomic assignment uses the RDP Classifier 2.12 (Wang et al., 2007) with an rbcL reference set available from https://github.com/terrimporter/rbcLClassifier.

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