rebased onto updated master

smith-chem-wisc · Feb 5, 2025 · 463d65a · 463d65a
2 parents 43f525b + 848413d
commit 463d65a
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/mzLib/MzLibUtil/PositionFrequencyAnalysis.cs b/mzLib/MzLibUtil/PositionFrequencyAnalysis.cs
@@ -143,7 +143,7 @@ public void PeptidePTMOccupancy(List<Tuple<string, string, List<string>, double>
 
                         // If the peptide's base sequence has not been seen, add it to the protein's dictionary
                         if (!protein.Peptides.ContainsKey(baseSeq))
-    {
+                        {
                             protein.Peptides[baseSeq] = new UtilPeptide(fullSeq);
                             protein.Peptides[baseSeq].Intensity = 0;
                         }
@@ -156,20 +156,20 @@ public void PeptidePTMOccupancy(List<Tuple<string, string, List<string>, double>
                         Dictionary<int, List<string>> peptideMods = fullSeq.ParseModifications(modOnNTerminus, modOnCTerminus);
                         // Go through the modified positions found froum the full sequence
                         foreach (var modpos in peptideMods)
-        {
+                        {
                             // If that position has not been recorded as containing a modification, add it to the base sequence's dictonary
                             if (!peptide.ModifiedAminoAcidPositions.ContainsKey(modpos.Key))
                             {
                                 peptide.ModifiedAminoAcidPositions[modpos.Key] = new Dictionary<string, UtilModification>();
                             }
                             var modifiedPosition = peptide.ModifiedAminoAcidPositions[modpos.Key];
-            
+
                             // Go through the modifications found at a modified amino acid index
                             foreach (var mod in modpos.Value)
                             {
                                 //If the name of that modification has not been seen, record that modification in the index's dictionary with an intensity of 0
                                 if (!modifiedPosition.ContainsKey(mod))
-            {
+                                {
                                     modifiedPosition[mod] = new UtilModification(mod, modpos.Key, 0);
                                 }
                                 // Increase the intensity of the modification by the intensity of the peptide