0.0.302

• MetaMorpheus has a new icon!
• A machine-learning algorithm similar to Percolator is used to estimate PSM-level error probabilities (the posterior error probability, "PEP"). This replaces the e-value calculation
• MSFileReader is no longer needed to read Thermo .raw files. Just drag your files in and accept the Thermo licence! Reading .raw files is faster now too
• Added protein ambiguity to the crosslink search
• In the crosslink search, if a single peptide outscores the alpha peptide, the single peptide is preferred. This helps correctly assign spectra with loop-linked missed cleavages
• Added many UniMod accession numbers to MetaMorpheus's modifications, which are reported in the .mzID file
• Fixed a bug where the nativeID for each PSM in the .mzID file was not correctly formatted
• Fixed a bug where sometimes parsimony was very slow when many PTM-containing peptides were present and "Treat modified peptides as different peptides" was unchecked
• Fixed a bug where the text boxes to search for a modification in the GUI would stop working