Pass dissociation type not autodetect to diss type collection (#2343)

* reverted filtering method for psms passed to FlashLFQ

* yo

---------

Co-authored-by: Alex <AlexSolivais@gmail.com>
Co-authored-by: MICHAEL SHORTREED <mrshortreed@wisc.edu>
Co-authored-by: Alexander-Sol <41119316+Alexander-Sol@users.noreply.github.com>

MetaMorpheus/TaskLayer/SearchTask/SearchTask.cs

@@ -508,7 +508,7 @@ public static void MatchInternalFragmentIons(PeptideSpectralMatch[] fileSpecific
                     foreach (PeptideWithSetModifications peptide in ambiguousPeptides)
                     {
                         internalFragments.Clear();
-                        peptide.FragmentInternally(combinedParams.DissociationType, minInternalFragmentLength, internalFragments);
+                        peptide.FragmentInternally(dissociationType, minInternalFragmentLength, internalFragments);
                         //TODO: currently, internal and terminal ions can match to the same observed peaks (much like how b- and y-ions can match to the same peaks). Investigate if we should change that...                        
                         matchedIonsForAllAmbiguousPeptides.Add(MetaMorpheusEngine.MatchFragmentIons(scanForThisPsm, internalFragments, combinedParams));
                     }