rebuilding site Sun Jan 19 07:16:26 PM PST 2025

simroux · Jan 20, 2025 · bd21f02 · bd21f02
1 parent 88988b4
commit bd21f02
Show file tree

Hide file tree

Showing 21 changed files with 459 additions and 70 deletions.
diff --git a/404.html b/404.html
@@ -205,6 +205,44 @@
 
 
 
+
+<script async src="https://www.googletagmanager.com/gtag/js?id=%7b%7d"></script>
+<script>
+  window.dataLayer = window.dataLayer || [];
+
+  function gtag() {
+      dataLayer.push(arguments);
+  }
+
+  function trackOutboundLink(url, target) {
+    gtag('event', 'click', {
+         'event_category': 'outbound',
+         'event_label': url,
+         'transport_type': 'beacon',
+         'event_callback': function () {
+           if (target !== '_blank') {
+             document.location = url;
+           }
+         }
+    });
+    console.debug("Outbound link clicked: " + url);
+  }
+
+  function onClickCallback(event) {
+    if ((event.target.tagName !== 'A') || (event.target.host === window.location.host)) {
+      return;
+    }
+    trackOutboundLink(event.target, event.target.getAttribute('target'));  
+  }
+
+  gtag('js', new Date());
+  gtag('config', '{}', {});
+
+
+  document.addEventListener('click', onClickCallback, false);
+</script>
+
+
 
 
 
@@ -214,8 +252,8 @@
 
 
   <link rel="manifest" href="/index.webmanifest">
-  <link rel="icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_32x32_fill_lanczos_center_3.png">
-  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_192x192_fill_lanczos_center_3.png">
+  <link rel="icon" type="image/png" href="/images/icon_hu7542497146199104341.png">
+  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hu9414133254159730754.png">
 
   <link rel="canonical" href="https://simroux.github.io/404.html">
 
@@ -309,7 +347,7 @@ <h1>Search</h1>
 
 
     <div class="d-none d-lg-inline-flex">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -322,7 +360,7 @@ <h1>Search</h1>
 
 
     <div class="navbar-brand-mobile-wrapper d-inline-flex d-lg-none">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -658,7 +696,7 @@ <h1>Page not found</h1>
 
 
 
-    <script src="/js/academic.min.3da86581634ab22d5bb3fc4505df30a5.js"></script>
+    <script src="/js/academic.min.8741d44cdc5fc49466a5835d1bbea364.js"></script>
 
 
 

diff --git a/author/simon-roux/avatar_hu12101772639244393882.png b/author/simon-roux/avatar_hu12101772639244393882.png
diff --git a/author/simon-roux/index.html b/author/simon-roux/index.html
@@ -205,6 +205,44 @@
 
 
 
+
+<script async src="https://www.googletagmanager.com/gtag/js?id=%7b%7d"></script>
+<script>
+  window.dataLayer = window.dataLayer || [];
+
+  function gtag() {
+      dataLayer.push(arguments);
+  }
+
+  function trackOutboundLink(url, target) {
+    gtag('event', 'click', {
+         'event_category': 'outbound',
+         'event_label': url,
+         'transport_type': 'beacon',
+         'event_callback': function () {
+           if (target !== '_blank') {
+             document.location = url;
+           }
+         }
+    });
+    console.debug("Outbound link clicked: " + url);
+  }
+
+  function onClickCallback(event) {
+    if ((event.target.tagName !== 'A') || (event.target.host === window.location.host)) {
+      return;
+    }
+    trackOutboundLink(event.target, event.target.getAttribute('target'));  
+  }
+
+  gtag('js', new Date());
+  gtag('config', '{}', {});
+
+
+  document.addEventListener('click', onClickCallback, false);
+</script>
+
+
 
 
 
@@ -216,8 +254,8 @@
 
 
   <link rel="manifest" href="/index.webmanifest">
-  <link rel="icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_32x32_fill_lanczos_center_3.png">
-  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_192x192_fill_lanczos_center_3.png">
+  <link rel="icon" type="image/png" href="/images/icon_hu7542497146199104341.png">
+  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hu9414133254159730754.png">
 
   <link rel="canonical" href="https://simroux.github.io/author/simon-roux/">
 
@@ -311,7 +349,7 @@ <h1>Search</h1>
 
 
     <div class="d-none d-lg-inline-flex">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -324,7 +362,7 @@ <h1>Search</h1>
 
 
     <div class="navbar-brand-mobile-wrapper d-inline-flex d-lg-none">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -609,7 +647,7 @@ <h1>Search</h1>
 
 
 
-      <img class="avatar avatar-circle" src="/author/simon-roux/avatar_hu30f5a53a1e57229ce4fa325bcf88dffa_268990_270x270_fill_lanczos_center_3.png" alt="Simon Roux">
+      <img class="avatar avatar-circle" src="/author/simon-roux/avatar_hu12101772639244393882.png" alt="Simon Roux">
 
 
       <div class="portrait-title">
@@ -849,7 +887,7 @@ <h3>Education</h3>
 
 
 
-    <script src="/js/academic.min.3da86581634ab22d5bb3fc4505df30a5.js"></script>
+    <script src="/js/academic.min.8741d44cdc5fc49466a5835d1bbea364.js"></script>
 
 
 

diff --git a/author/simon-roux/index.xml b/author/simon-roux/index.xml
@@ -12,5 +12,15 @@
       <link>https://simroux.github.io/author/simon-roux/</link>
     </image>
 
+    <item>
+      <title>Simon Roux</title>
+      <link>https://simroux.github.io/author/simon-roux/</link>
+      <pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate>
+      <guid>https://simroux.github.io/author/simon-roux/</guid>
+      <description>&lt;p&gt;At the DOE Joint Genome Institute, I lead the Viral Genomics group where we explore viruses of microbes and their impacts on ecosystems using (mostly) fancy &amp;lsquo;omics tools. Our current projects include the study of viral diversity and virus:host interactions in soil and freshwater environments, along with the development of new bioinformatics tools and experimental protocols to probe and characterize uncultivated viruses. We also assist users of the JGI Metagenome Program with their analysis, including identification of viral sequences, functional annotation, taxonomic classification, etc.&lt;/p&gt;
+&lt;p&gt;The long-term goal of my research is to understand the ecological and evolutionary drivers of virus:host dynamics in natural microbial communities. This research involves a mix of experimental and computational approaches spanning from the molecular to the ecosystem scale, trying to address fundamental questions like &amp;ldquo;how do viruses spread and adapt across environments ?&amp;rdquo;, &amp;ldquo;how do viruses take over and reprogram microbial cells ?&amp;rdquo;, and &amp;ldquo;how do viral infections alter ecosystem processes ?&amp;rdquo;.&lt;/p&gt;
+</description>
+    </item>
+
   </channel>
 </rss>
diff --git a/authors/index.html b/authors/index.html
@@ -205,6 +205,44 @@
 
 
 
+
+<script async src="https://www.googletagmanager.com/gtag/js?id=%7b%7d"></script>
+<script>
+  window.dataLayer = window.dataLayer || [];
+
+  function gtag() {
+      dataLayer.push(arguments);
+  }
+
+  function trackOutboundLink(url, target) {
+    gtag('event', 'click', {
+         'event_category': 'outbound',
+         'event_label': url,
+         'transport_type': 'beacon',
+         'event_callback': function () {
+           if (target !== '_blank') {
+             document.location = url;
+           }
+         }
+    });
+    console.debug("Outbound link clicked: " + url);
+  }
+
+  function onClickCallback(event) {
+    if ((event.target.tagName !== 'A') || (event.target.host === window.location.host)) {
+      return;
+    }
+    trackOutboundLink(event.target, event.target.getAttribute('target'));  
+  }
+
+  gtag('js', new Date());
+  gtag('config', '{}', {});
+
+
+  document.addEventListener('click', onClickCallback, false);
+</script>
+
+
 
 
 
@@ -216,8 +254,8 @@
 
 
   <link rel="manifest" href="/index.webmanifest">
-  <link rel="icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_32x32_fill_lanczos_center_3.png">
-  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_192x192_fill_lanczos_center_3.png">
+  <link rel="icon" type="image/png" href="/images/icon_hu7542497146199104341.png">
+  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hu9414133254159730754.png">
 
   <link rel="canonical" href="https://simroux.github.io/authors/">
 
@@ -311,7 +349,7 @@ <h1>Search</h1>
 
 
     <div class="d-none d-lg-inline-flex">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -324,7 +362,7 @@ <h1>Search</h1>
 
 
     <div class="navbar-brand-mobile-wrapper d-inline-flex d-lg-none">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -690,7 +728,7 @@ <h1>Authors</h1>
 
 
 
-    <script src="/js/academic.min.3da86581634ab22d5bb3fc4505df30a5.js"></script>
+    <script src="/js/academic.min.8741d44cdc5fc49466a5835d1bbea364.js"></script>
 
 
 

diff --git a/categories/index.html b/categories/index.html
@@ -205,6 +205,44 @@
 
 
 
+
+<script async src="https://www.googletagmanager.com/gtag/js?id=%7b%7d"></script>
+<script>
+  window.dataLayer = window.dataLayer || [];
+
+  function gtag() {
+      dataLayer.push(arguments);
+  }
+
+  function trackOutboundLink(url, target) {
+    gtag('event', 'click', {
+         'event_category': 'outbound',
+         'event_label': url,
+         'transport_type': 'beacon',
+         'event_callback': function () {
+           if (target !== '_blank') {
+             document.location = url;
+           }
+         }
+    });
+    console.debug("Outbound link clicked: " + url);
+  }
+
+  function onClickCallback(event) {
+    if ((event.target.tagName !== 'A') || (event.target.host === window.location.host)) {
+      return;
+    }
+    trackOutboundLink(event.target, event.target.getAttribute('target'));  
+  }
+
+  gtag('js', new Date());
+  gtag('config', '{}', {});
+
+
+  document.addEventListener('click', onClickCallback, false);
+</script>
+
+
 
 
 
@@ -216,8 +254,8 @@
 
 
   <link rel="manifest" href="/index.webmanifest">
-  <link rel="icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_32x32_fill_lanczos_center_3.png">
-  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hudcd504423819504d86a4be24c22d993f_62405_192x192_fill_lanczos_center_3.png">
+  <link rel="icon" type="image/png" href="/images/icon_hu7542497146199104341.png">
+  <link rel="apple-touch-icon" type="image/png" href="/images/icon_hu9414133254159730754.png">
 
   <link rel="canonical" href="https://simroux.github.io/categories/">
 
@@ -311,7 +349,7 @@ <h1>Search</h1>
 
 
     <div class="d-none d-lg-inline-flex">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -324,7 +362,7 @@ <h1>Search</h1>
 
 
     <div class="navbar-brand-mobile-wrapper d-inline-flex d-lg-none">
-      <a class="navbar-brand" href="/"><img src="/images/logo_hu7a5e3ae3ac24c71dc657f14197b43842_255303_0x70_resize_lanczos_3.png" alt="Simon Roux"></a>
+      <a class="navbar-brand" href="/"><img src="/images/logo_hu13903402681714629955.png" alt="Simon Roux"></a>
     </div>
 
 
@@ -683,7 +721,7 @@ <h1>Categories</h1>
 
 
 
-    <script src="/js/academic.min.3da86581634ab22d5bb3fc4505df30a5.js"></script>
+    <script src="/js/academic.min.8741d44cdc5fc49466a5835d1bbea364.js"></script>
 
 
 

diff --git a/images/icon_hu14056126660657468073.png b/images/icon_hu14056126660657468073.png
diff --git a/images/icon_hu7542497146199104341.png b/images/icon_hu7542497146199104341.png
diff --git a/images/icon_hu9414133254159730754.png b/images/icon_hu9414133254159730754.png
diff --git a/images/logo_hu13903402681714629955.png b/images/logo_hu13903402681714629955.png