container 'ubuntu:20.04'

Doh. Already in main.nf
quiltdata · Jan 30, 2024 · 9acbaf8 · 9acbaf8
1 parent 66ba3ea
commit 9acbaf8
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/main.gallery.nf b/main.gallery.nf
@@ -10,7 +10,7 @@ test_file_quilt = 'quilt+s3://nf-core-gallery#package=nf-core/hlatyping&path=REA
 myFileChannel = Channel.fromList([file(test_file_s3), file(test_file_quilt)])
 
 process CHECK_INPUT {
-    container = 'quay.io/nextflow/bash'
+    container 'ubuntu:20.04'
     input:
         path input
 

diff --git a/main.nf b/main.nf
@@ -10,7 +10,6 @@ packageFiles = Channel.fromPath(params.input)
 
 process transfer {
     publishDir params.outdir, mode: 'copy', overwrite: true
-
     container 'ubuntu:20.04'
 
     input:

diff --git a/main.path.nf b/main.path.nf
@@ -10,6 +10,7 @@ test_file_quilt = 'quilt+s3://quilt-example#package=examples/hurdat2&path=README
 myFileChannel = Channel.fromList([file(test_file_local), file(test_file_s3), file(test_file_quilt)])
 
 process CHECK_INPUT {
+    container 'ubuntu:20.04'
     input:
         path input
-Original file line number
+Diff line change
@@ Expand Up / @@ -10,7 +10,6 @@ packageFiles = Channel.fromPath(params.input) @@
     process transfer {
         publishDir params.outdir, mode: 'copy', overwrite: true
         container 'ubuntu:20.04'
         input:
@@ Expand Down @@