Releases: pcdshub/pcds-envs
Releases · pcdshub/pcds-envs
pcds-5.9.1
I made this release to do a minor update to numexpr to avoid this warning from pandas and any issues that might come along with it:
/cds/home/z/zlentz/miniconda3/envs/pcds-5.9.0/lib/python3.9/site-packages/pandas/core/computation/expressions.py:21: UserWarning: Pandas requires version '2.8.4' or newer of 'numexpr' (version '2.7.3' currently installed).
from pandas.core.computation.check import NUMEXPR_INSTALLED
In addition, we've pulled in the following requests and updates:
Added the Following Packages
PCDS Package Updates
Packages With Degraded Versions
| Package |
Old |
New |
| botorch |
0.11.3 |
0.10.0 |
| gpytorch |
1.12 |
1.11 |
| linear_operator |
0.5.2 |
0.5.1 |
Added the Following Dependencies
- deap (required by xopt)
- libgcc (required by cryptography, deap, libgcc-ng, libstdcxx, openssl, which are used in atef, bluesky, bluesky-live, databroker, happi, hklpy, ipython, jupyter, ophyd, pandas, pmpsui, scikit-image, suitcase-tiff, xarray)
- libstdcxx (required by deap, libstdcxx-ng)
- lightpath-base (required by lightpath, pcdsdevices)
- orjson (required by hklpy, xopt)
pcds-5.9.0
Added the Following Packages
PCDS Package Updates
SLAC Package Updates
Lab Community Package Updates
| Package |
Old |
New |
| hklpy |
1.1.0 |
1.1.1 |
| pcaspy |
0.7.3 |
0.8.1 |
| pyepics |
3.5.2 |
3.5.7 |
Python Community Core Package Updates
| Package |
Old |
New |
| flake8 |
7.0.0 |
7.1.1 |
| numpy |
1.24.4 |
1.26.4 |
| opencv |
4.8.1 |
4.10.0 |
| pandas |
2.1.1 |
2.2.2 |
| pre-commit |
3.7.0 |
3.8.0 |
| pytest |
8.1.1 |
8.3.2 |
| scikit-image |
0.21.0 |
0.24.0 |
| scikit-learn |
1.3.1 |
1.5.1 |
| scipy |
1.11.3 |
1.13.1 |
| sphinx |
6.2.1 |
7.4.7 |
| xarray |
2023.9.0 |
2024.7.0 |
Other Python Community Major Updates
| Package |
Old |
New |
| anyio |
3.7.1 |
4.4.0 |
| asteval |
0.9.31 |
1.0.2 |
| attrs |
23.1.0 |
24.2.0 |
| boltons |
23.0.0 |
24.0.0 |
| cloudpickle |
2.2.1 |
3.0.0 |
| conda |
23.9.0 |
24.7.1 |
| conda-build |
3.27.0 |
24.7.1 |
| conda-forge-pinning |
2023.10.06.16.31.06 |
2024.08.27.19.11.25 |
| cryptography |
42.0.5 |
43.0.0 |
| dask |
2023.9.3 |
2024.8.0 |
| dask-core |
2023.9.3 |
2024.8.0 |
| distributed |
2023.9.3 |
2024.8.0 |
| executing |
1.2.0 |
2.0.1 |
| fsspec |
2023.9.2 |
2024.6.1 |
| future |
0.18.3 |
1.0.0 |
| gdb |
14.2 |
15.1 |
| graphviz |
8.1.0 |
12.0.0 |
| harfbuzz |
8.2.1 |
9.0.0 |
| httpcore |
0.18.0 |
1.0.5 |
| imagecodecs |
2023.9.18 |
2024.6.1 |
| importlib-metadata |
6.8.0 |
8.4.0 |
| importlib_metadata |
6.8.0 |
8.4.0 |
| jsonpointer |
2.4 |
3.0.0 |
| keyring |
24.3.0 |
25.3.0 |
| libabseil |
20230802.1 |
20240116.2 |
| libarrow |
14.0.2 |
17.0.0 |
| libarrow-acero |
14.0.2 |
17.0.0 |
| libarrow-dataset |
14.0.2 |
17.0.0 |
| libarrow-substrait |
14.0.2 |
17.0.0 |
| libclang13 |
15.0.7 |
18.1.8 |
| libgcc-ng |
13.2.0 |
14.1.0 |
| libgfortran-ng |
13.2.0 |
14.1.0 |
| libgfortran5 |
13.2.0 |
14.1.0 |
| libopenvino |
2023.1.0 |
2024.3.0 |
| libopenvino-auto-batch-plugin |
2023.1.0 |
2024.3.0 |
| libopenvino-auto-plugin |
2023.1.0 |
2024.3.0 |
| libopenvino-hetero-plugin |
2023.1.0 |
2024.3.0 |
| libopenvino-intel-cpu-plugin |
2023.1.0 |
2024.3.0 |
| libopenvino-intel-gpu-plugin |
2023.1.0 |
2024.3.0 |
| libopenvino-ir-frontend |
2023.1.0 |
2024.3.0 |
| libopenvino-onnx-frontend |
2023.1.0 |
2024.3.0 |
| libopenvino-paddle-frontend |
2023.1.0 |
2024.3.0 |
| libopenvino-pytorch-frontend |
2023.1.0 |
2024.3.0 |
| libopenvino-tensorflow-frontend |
2023.1.0 |
2024.3.0 |
| libopenvino-tensorflow-lite-frontend |
2023.1.0 |
2024.3.0 |
| libparquet |
14.0.2 |
17.0.0 |
| libstdcxx-ng |
13.2.0 |
14.1.0 |
| libsystemd0 |
254 |
255 |
| llvm-openmp |
17.0.2 |
18.1.8 |
| lxml |
4.9.3 |
5.3.0 |
| mkdocs-autorefs |
0.5.0 |
1.1.0 |
| mkl |
2022.2.1 |
2023.2.0 |
| nodejs |
20.8.0 |
22.6.0 |
| orc |
1.9.2 |
2.0.2 |
| packaging |
23.2 |
24.1 |
| param |
1.13.0 |
2.1.1 |
| pip |
23.3.2 |
24.2 |
| platformdirs |
3.11.0 |
4.2.2 |
| protobuf |
4.24.4 |
5.27.4 |
| psutil |
5.9.5 |
6.0.0 |
| pulseaudio-client |
16.1 |
17.0 |
| pyarrow |
14.0.2 |
17.0.0 |
| pydantic |
1.10.13 |
2.8.2 |
| pytest-cov |
4.1.0 |
5.0.0 |
| python-tzdata |
2023.3 |
2024.1 |
| pytz |
2023.3.post1 |
2024.1 |
| pyzmq |
25.1.1 |
26.2.0 |
| rapidfuzz |
2.15.1 |
3.9.6 |
| regex |
2023.10.3 |
2024.7.24 |
| requests-oauthlib |
1.3.1 |
2.0.0 |
| ripgrep |
13.0.0 |
14.1.0 |
| setuptools |
68.2.2 |
... |
pcds-5.8.4
This is a small edit on top of pcds-5.8.3 to include a forgotten update from pmpsdb-client 1.1.0 to pmpsdb_client 1.2.0.
On the ecs systems, the update will be documented as from 5.8.2 to 5.8.4 with combined notes.
The tag genealogy will be preserved here.
Added the Following Packages
- flask-authnz
- pmpsdb_client
- pmpsui
Added the Following Dependencies
- fabric (required by pmpsdb-client, pmpsdb_client)
- invoke (required by fabric, paramiko, which are used in bluesky, bluesky-live, databroker, hklpy, ophyd, ophyd-async, pandas, pcdsdevices, pmpsdb_client, scikit-image, suitcase-tiff, tiled, xarray)
Removed the Following Packages
pcds-5.8.3
PCDS Package Updates
SLAC Package Updates
Python Community Core Package Updates
| Package |
Old |
New |
| pre-commit |
3.6.2 |
3.7.0 |
| pytest |
8.0.2 |
8.1.1 |
Added the Following Packages
Added the Following Dependencies
- libxcrypt (required by perl)
pcds-5.8.2
PCDS Package Updates
SLAC Package Updates
Lab Community Package Updates
| Package |
Old |
New |
| hklpy |
1.0.4 |
1.1.0 |
Python Community Core Package Updates
| Package |
Old |
New |
| pytest |
7.4.4 |
8.0.2 |
Other Python Community Major Updates
| Package |
Old |
New |
| black |
23.12.1 |
24.2.0 |
| ca-certificates |
2023.11.17 |
2024.2.2 |
| certifi |
2023.11.17 |
2024.2.2 |
| cryptography |
41.0.7 |
42.0.5 |
| gdb |
12.1 |
14.2 |
| pyopenssl |
23.2.0 |
24.0.0 |
Packages With Degraded Versions
| Package |
Old |
New |
| trio |
0.22.2 |
0.21.0 |
Added the Following Packages
- flask-authnz
- pmpsui
- pyqt5-stubs
Added the Following Dependencies
- async_generator (required by trio, which is used in atef, bluesky, bluesky-live, caproto, databroker, happi, hklpy, hutch-python, ipython, jupyter, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- pykrb5 (required by requests-kerberos)
- pyspnego (required by requests-kerberos)
- python-gssapi (required by requests-kerberos)
- requests-kerberos (required by atlassian-python-api)
- textual (required by memray)
pcds-5.8.1
PCDS Package Updates
SLAC Package Updates
Lab Community Package Updates
| Package |
Old |
New |
| caproto |
1.1.0 |
1.1.1 |
| hklpy |
1.0.3 |
1.0.4 |
| pyepics |
3.5.0 |
3.5.2 |
| ophyd-async |
0.1.0 |
0.2.0 |
Python Community Core Package Updates
| Package |
Old |
New |
| flake8 |
6.1.0 |
7.0.0 |
| pre-commit |
3.4.0 |
3.6.0 |
Other Python Community Major Updates
| Package |
Old |
New |
| libarrow |
13.0.0 |
14.0.2 |
| libjpeg-turbo |
2.1.5.1 |
3.0.0 |
| libpq |
15.4 |
16.1 |
| pyarrow |
13.0.0 |
14.0.2 |
| pygithub |
1.59.1 |
2.1.1 |
Added the Following Packages
- annotated-types
- pydantic-core
Added the Following Dependencies
- cirun (required by conda-smithy)
- editables (required by hatchling, which is used in ipython, jupyter)
- hatch (required by cirun, notebook, which are used in ipython, jupyter)
- hatchling (required by cirun, hatch, which are used in ipython, jupyter)
- hyperlink (required by hatch, which is used in ipython, jupyter)
- jaraco.classes (required by keyring, which is used in ipython, jupyter)
- jeepney (required by keyring, secretstorage, which are used in ipython, jupyter)
- keyring (required by hatch, which is used in ipython, jupyter)
- libarrow-acero (required by libarrow-dataset, libarrow-substrait, pyarrow, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libarrow-dataset (required by libarrow-substrait, pyarrow, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libarrow-flight (required by libarrow-flight-sql, pyarrow, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libarrow-flight-sql (required by pyarrow, which is used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libarrow-gandiva (required by pyarrow, which is used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libarrow-substrait (required by pyarrow, which is used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libparquet (required by libarrow-dataset, pyarrow, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- libre2-11 (required by libarrow, libarrow-gandiva, libgrpc, re2, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- secretstorage (required by keyring, which is used in ipython, jupyter)
- spec2nexus (required by hklpy)
- tomli-w (required by hatch, which is used in ipython, jupyter)
- trove-classifiers (required by hatchling, which is used in ipython, jupyter)
- userpath (required by hatch, which is used in ipython, jupyter)
pcds-5.8.0
PCDS Package Updates
SLAC Package Updates
Lab Community Package Updates
| Package |
Old |
New |
| tiled |
0.1.0a85 |
0.1.0a107 |
Python Community Core Package Updates
| Package |
Old |
New |
| flake8 |
6.0.0 |
6.1.0 |
| numpy |
1.23.5 |
1.24.4 |
| opencv |
4.5.1 |
4.8.1 |
| pandas |
1.5.3 |
2.1.1 |
| pre-commit |
3.3.3 |
3.4.0 |
| pyqt |
5.12.3 |
5.15.9 |
| scikit-image |
0.19.3 |
0.21.0 |
| scikit-learn |
1.2.2 |
1.3.1 |
| scipy |
1.10.1 |
1.11.3 |
| sphinx |
6.1.3 |
6.2.1 |
| xarray |
2023.3.0 |
2023.9.0 |
Other Python Community Major Updates
| Package |
Old |
New |
| argon2-cffi |
21.3.0 |
23.1.0 |
| async-timeout |
3.0.1 |
4.0.3 |
| attrs |
22.2.0 |
23.1.0 |
| bcrypt |
3.2.2 |
4.0.1 |
| bokeh |
2.4.3 |
3.2.2 |
| boolean.py |
3.7 |
4.0 |
| chardet |
4.0.0 |
5.2.0 |
| contextlib2 |
0.5.5 |
21.6.0 |
| cryptography |
39.0.0 |
41.0.4 |
| curl |
7.86.0 |
8.4.0 |
| cython |
0.29.34 |
3.0.3 |
| execnet |
1.9.0 |
2.0.2 |
| ffmpeg |
4.3.2 |
6.0.0 |
| flask |
2.3.2 |
3.0.0 |
| graphviz |
2.47.2 |
8.1.0 |
| greenlet |
2.0.2 |
3.0.0 |
| harfbuzz |
2.9.1 |
8.2.1 |
| icu |
68.2 |
73.2 |
| imagecodecs |
2021.3.31 |
2023.9.18 |
| importlib-resources |
5.12.0 |
6.1.0 |
| importlib_resources |
5.12.0 |
6.1.0 |
| jasper |
1.900.1 |
4.0.0 |
| jupyter_server |
1.23.6 |
2.7.3 |
| lerc |
2.2.1 |
4.0.0 |
| libabseil |
20220623.0 |
20230802.1 |
| libclang |
11.1.0 |
15.0.7 |
| libcst |
0.4.9 |
1.1.0 |
| libcurl |
7.86.0 |
8.4.0 |
| libgcc-ng |
12.2.0 |
13.2.0 |
| libgfortran-ng |
12.2.0 |
13.2.0 |
| libgfortran5 |
12.2.0 |
13.2.0 |
| libpq |
13.8 |
15.4 |
| libprotobuf |
3.21.12 |
4.23.4 |
| librdkafka |
1.9.2 |
2.2.0 |
| libstdcxx-ng |
12.2.0 |
13.2.0 |
| license-expression |
1.2 |
30.1.1 |
| line_profiler |
3.4.0 |
4.1.1 |
| llvm-openmp |
15.0.7 |
17.0.2 |
| markdown-it-py |
2.2.0 |
3.0.0 |
| mistune |
2.0.5 |
3.0.1 |
| nodejs |
16.12.0 |
20.8.0 |
| notebook |
6.5.4 |
7.0.4 |
| openssl |
1.1.1u |
3.1.3 |
| pandoc |
2.19.2 |
3.1.3 |
| panel |
0.14.4 |
1.2.3 |
| pillow |
9.5.0 |
10.0.1 |
| pyarrow |
11.0.0 |
13.0.0 |
| pyqt5-sip |
4.19.18 |
12.12.2 |
| pyqtads |
3.8.2 |
4.1.1 |
| python-confluent-kafka |
1.9.2 |
2.2.0 |
| python-libarchive-c |
4.0 |
5.0 |
| pyviz_comms |
2.2.1 |
3.0.0 |
| re2 |
2022.06.01 |
2023.03.02 |
| reportlab |
3.5.68 |
4.0.4 |
| requests-toolbelt |
0.10.1 |
1.0.0 |
| setuptools |
67.6.1 |
68.2.2 |
| setuptools-scm |
7.1.0 |
8.0.4 |
| sphinx-click |
4.4.0 |
5.0.1 |
| sqlalchemy |
1.4.46 |
2.0.21 |
| tblib |
1.7.0 |
2.0.0 |
| tifffile |
2021.4.8 |
2023.9.26 |
| tzlocal |
4.3 |
5.1 |
| urllib3 |
1.26.15 |
2.0.7 |
| werkzeug |
2.3.4 |
3.0.0 |
| x264 |
1!161.3030 |
1!164.3095 |
| zfp |
0.5.5 |
1.0.0 |
| zict |
2.2.0 |
3.0.0 |
| cyclonedx-python-lib |
2.7.1 |
4.2.2 |
| laserbeamsize |
1.9.4 |
2.0.3 |
Packages With Degraded Versions
| Package |
Old |
New |
| fasteners |
0.18 |
0.17.3 |
Added the Following Packages
- ophyd-async
- pyqtwebengine
Added the Following Dependencies
- aiosignal (required by aiohttp, which is used in bluesky, bluesky-live, databroker, happi, hutch-python, ipython, jupyter, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, whatrecord, xarray)
- aiosqlite (required by sqlalchemy, tiled, which are used in pandas, pcdscalc)
- aom (required by ffmpeg, libavif16, which are used in bluesky, databroker, scikit-image, suitcase-tiff, tiled)
- async-lru (required by jupyterlab, which is used in ipython, jupyter)
- asyncpg (required by sqlalchemy, tiled, which are used in pandas, pcdscalc)
- attr (required by libcap, which is used in hutch-python, ipython, jupyter, lucid, pyqt)
- awkward (required by tiled)
- awkward-cpp (required by awkward, which is used in tiled)
- aws-c-auth (required by aws-c-s3, aws-crt-cpp, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- aws-c-cal (required by aws-c-auth, aws-c-http, aws-c-io, aws-c-s3, aws-crt-cpp, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- aws-c-common (required by aws-c-auth, aws-c-cal, aws-c-compression, aws-c-event-stream, aws-c-http, aws-c-io, aws-c-mqtt, aws-c-s3, aws-c-sdkutils, aws-checksums, aws-crt-cpp, aws-sdk-cpp, which are used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- aws-c-compression (required by aws-c-http, which is used in bluesky, bluesky-live, databroker, ophyd, ophyd-async, pandas, pcdsdevices, scikit-image, suitcase-tiff, tiled, xarray)
- aws-c-event-stream (required by aws-crt-cpp, aws-sdk-c...
pcds-5.7.3
PCDS Package Updates
SLAC Package Updates
Lab Community Package Updates
| Package |
Old |
New |
| caproto |
1.0.1 |
1.1.0 |
Python Community Core Package Updates
| Package |
Old |
New |
| pytest |
7.3.1 |
7.4.0 |
Packages With Degraded Versions
| Package |
Old |
New |
| markdown |
3.4.3 |
3.3.7 |
Added the Following Packages
- atef
- mkdocs-material
- mkdocstrings
- pytkdocs
- slac-alarm-manager
Added the Following Dependencies
- astunparse (required by pytkdocs)
- codecov (required by mpmath, networkx, pydm, whatrecord, which are used in ads-async, bluesky, bluesky-live, databroker, happi, hutch-python, ipython, jupyter, nabs, ophyd, pcdscalc, pcdsdevices, pcdsutils, scikit-image, suitcase-tiff, tiled, transfocate, typhos, xarray)
- commonmark (required by recommonmark, sphinx-argparse, which are used in lucid, pcdscalc, pytmc, whatrecord)
- docstring_parser (required by pytkdocs)
- doctr (required by atef, happi)
- ghp-import (required by mkdocs)
- kafka-python (required by slac-alarm-manager)
- mergedeep (required by mkdocs)
- mkdocs (required by mkdocs-autorefs, mkdocs-material, mkdocstrings)
- mkdocs-autorefs (required by mkdocstrings)
- mkdocs-material-extensions (required by mkdocs-material)
- nbsphinx (required by hutch-python)
- pymdown-extensions (required by mkdocs-material, mkdocstrings)
- pytest-cov (required by asteval, botorch, fsspec, happi, ipykernel, ipywidgets, jupyter-core, lz4, memray, mock, mpmath, networkx, numcodecs, numpydoc, patsy, pkginfo, pydm, pytmc, qtpy, whatrecord, which are used in ads-async, bluesky, bluesky-live, databroker, hutch-python, ipython, jupyter, lightpath, lucid, nabs, ophyd, pcdscalc, pcdsdevices, pcdsutils, pcdswidgets, scikit-image, suitcase-tiff, tiled, timechart, transfocate, typhos, xarray)
- pyyaml-env-tag (required by mkdocs)
- recommonmark (required by atef, epicsmacrolib, pcdscalc, which are used in whatrecord)
- sphinx-argparse (required by lucid, pytmc)
- sphinx-autodoc-typehints (required by anyio, botorch, graphviz, pytmc, which are used in ipython, jupyter, tiled, whatrecord)
- sphinx-click (required by happi)
- sphinx-copybutton (required by ads-async, atef, epicsmacrolib, pcdscalc, pcdsutils, which are used in whatrecord)
- sphinxcontrib-websupport (required by pytmc, sphinx)
- watchdog (required by mkdocs, werkzeug)
pcds-5.7.2
PCDS Package Updates
Python Community Core Package Updates
| Package |
Old |
New |
| pre-commit |
3.2.2 |
3.3.1 |
Other Python Community Major Updates
| Package |
Old |
New |
| black |
22.12.0 |
23.3.0 |
| ca-certificates |
2022.12.7 |
2023.5.7 |
| certifi |
2022.12.7 |
2023.5.7 |
| jupyter_client |
7.3.1 |
8.2.0 |
| packaging |
21.3 |
23.1 |
Added the Following Packages
Added the Following Dependencies
- importlib_metadata (required by jupyter_client)
- wurlitzer (required by spyder-kernels)
pcds-5.7.1
PCDS Package Updates
Packages With Degraded Versions
| Package |
Old |
New |
| black |
23.3.0 |
22.12.0 |
| conda |
23.3.1 |
23.1.0 |
| packaging |
23.0 |
21.3 |
| pip-audit |
2.5.4 |
2.4.12 |
Added the Following Packages
- docs-versions-menu
- pytest-asyncio
Added the Following Dependencies
- resolvelib (required by pip-audit)
