Merge pull request #188 from ZLLentz/rel-4.1.3

ENH: updated pcds to 4.1.3

deploy/hosts.txt

@@ -4,6 +4,10 @@ mec-control
 mec-daq
 mfx-control
 mfx-daq
+rix-console
+rix-control
+rix-daq
+rix-monitor
 tmo-control
 tmo-daq
 xcs-control

envs/pcds/conda-packages.txt

@@ -13,7 +13,7 @@ databroker>=1.2.3
 datashader
 doctr
 docutils=0.16
-elog>=1.0.2
+elog>=1.1.0
 epicscorelibs=7.0.3.99.4.0
 flake8
 fzf
@@ -32,15 +32,15 @@ line_profiler
 lucid>=0.7.2
 lxml
 mysqlclient
-nabs>=1.1.1
+nabs>=1.1.2
 numpy>=1.14
 opencv
 ophyd>=1.6.1
 pandas
 panel
 papermill
 pcaspy
-pcdscalc>=0.2.0
+pcdscalc>=0.3.0
 pcdsdaq>=2.3.4
 pcdsdevices>=4.4.0
 pcdsutils>=0.4.2
@@ -66,7 +66,7 @@ pytest-qt
 pytest-timeout
 python-graphviz
 python-ldap
-pytmc>=2.9.0
+pytmc>=2.9.1
 qdarkstyle
 scikit-image
 scikit-learn
@@ -78,7 +78,7 @@ sphinx
 sphinx_rtd_theme
 tc_release>=0.2.1
 timechart>=1.2.4
-transfocate>=0.5.0
+transfocate=0.5.0
 typhos>=1.1.6
 versioneer
 xarray

envs/pcds/env.yaml

@@ -1,4 +1,4 @@
-name: pcds-4.1.2
+name: pcds-4.1.3
 channels:
   - conda-forge
   - pcds-tag
@@ -16,7 +16,7 @@ dependencies:
   - appdirs=1.4.4
   - archapp=1.0.0
   - argon2-cffi=20.1.0
-  - arrow=1.0.3
+  - arrow=1.1.0
   - asciitree=0.3.3
   - asteval=0.9.23
   - async_generator=1.10
@@ -28,7 +28,7 @@ dependencies:
   - backports.functools_lru_cache=1.6.4
   - beautifulsoup4=4.9.3
   - binaryornot=0.4.4
-  - black=20.8b1
+  - black=21.4b0
   - bleach=3.3.0
   - blinker=1.4
   - blosc=1.21.0
@@ -46,7 +46,7 @@ dependencies:
   - ca-certificates=2020.12.5
   - cached-property=1.5.2
   - cached_property=1.5.2
-  - cachetools=4.2.1
+  - cachetools=4.2.2
   - cairo=1.16.0
   - caproto=0.8.0
   - certifi=2020.12.5
@@ -62,10 +62,10 @@ dependencies:
   - coloredlogs=15.0
   - conda=4.10.1
   - conda-build=3.21.4
-  - conda-forge-pinning=2021.04.15.09.30.17
+  - conda-forge-pinning=2021.04.28.12.37.37
   - conda-pack=0.6.0
   - conda-package-handling=1.7.3
-  - conda-smithy=3.10.0
+  - conda-smithy=3.10.1
   - contextlib2=0.5.5
   - cookiecutter=1.7.2
   - coverage=5.5
@@ -76,8 +76,8 @@ dependencies:
   - cyrus-sasl=2.1.27
   - cython=0.29.23
   - cytoolz=0.11.0
-  - dask=2021.4.0
-  - dask-core=2021.4.0
+  - dask=2021.4.1
+  - dask-core=2021.4.1
   - databroker=1.2.3
   - dataclasses=0.8
   - datashader=0.12.1
@@ -87,14 +87,14 @@ dependencies:
   - defusedxml=0.7.1
   - deprecated=1.2.12
   - distlib=0.3.1
-  - distributed=2021.4.0
+  - distributed=2021.4.1
   - docopt=0.6.2
   - doct=1.1.0
   - doctr=1.9.0
   - docutils=0.16
   - dpkt=1.9.5
   - editdistance-s=1.0.0
-  - elog=1.0.2
+  - elog=1.1.0
   - entrypoints=0.3
   - epics-base=7.0.5.0
   - epics-pypdb=0.1.5
@@ -105,7 +105,7 @@ dependencies:
   - fasteners=0.14.1
   - ffmpeg=4.3.1
   - filelock=3.0.12
-  - flake8=3.9.0
+  - flake8=3.9.1
   - font-ttf-dejavu-sans-mono=2.37
   - font-ttf-inconsolata=2.001
   - font-ttf-source-code-pro=2.030
@@ -115,7 +115,7 @@ dependencies:
   - fonts-conda-forge=1
   - freetype=2.10.4
   - fribidi=1.0.10
-  - fsspec=0.9.0
+  - fsspec=2021.4.0
   - future=0.18.2
   - fuzzywuzzy=0.18.0
   - fzf=0.27.0
@@ -125,22 +125,22 @@ dependencies:
   - giflib=5.2.1
   - git=2.30.2
   - gitdb=4.0.7
-  - gitpython=3.1.14
+  - gitpython=3.1.15
   - glib=2.68.1
   - glib-tools=2.68.1
   - glob2=0.7
   - gmp=6.2.1
   - gnutls=3.6.13
   - graphite2=1.3.13
-  - graphviz=2.47.0
+  - graphviz=2.47.1
   - greenlet=1.0.0
   - grpcio=1.33.2
   - grpcio-tools=1.33.2
   - gst-plugins-base=1.14.5
   - gstreamer=1.18.4
   - gtk2=2.24.33
   - gts=0.7.6
-  - h5py=3.1.0
+  - h5py=3.2.1
   - happi=1.9.0
   - harfbuzz=2.8.0
   - hdf5=1.10.6
@@ -152,13 +152,13 @@ dependencies:
   - hutch-python=1.10.0
   - hxrsnd=0.2.4
   - icu=68.1
-  - identify=2.2.3
+  - identify=2.2.4
   - idna=2.10
   - imagecodecs=2021.3.31
   - imageio=2.9.0
   - imagesize=1.2.0
-  - importlib-metadata=3.10.1
-  - importlib_metadata=3.10.1
+  - importlib-metadata=4.0.1
+  - importlib_metadata=4.0.1
   - importlib_resources=5.1.2
   - iniconfig=1.1.1
   - intake=0.6.2
@@ -168,7 +168,7 @@ dependencies:
   - ipywidgets=7.6.3
   - isodate=0.6.0
   - isort=5.8.0
-  - jack=0.125.0
+  - jack=1.9.18
   - jasper=1.900.1
   - jdcal=1.4.1
   - jedi=0.18.0
@@ -203,6 +203,7 @@ dependencies:
   - libev=4.33
   - libevent=2.1.10
   - libffi=3.3
+  - libflac=1.3.3
   - libgcc-ng=9.3.0
   - libgd=2.3.2
   - libgfortran-ng=9.3.0
@@ -217,19 +218,23 @@ dependencies:
   - libllvm11=11.1.0
   - libnghttp2=1.43.0
   - libntlm=1.4
+  - libogg=1.3.4
   - libopenblas=0.3.12
   - libopencv=4.5.1
+  - libopus=1.3.1
   - libpng=1.6.37
   - libpq=12.3
   - libprotobuf=3.15.8
   - librsvg=2.50.3
+  - libsndfile=1.0.31
   - libsodium=1.0.18
   - libssh2=1.9.0
   - libstdcxx-ng=9.3.0
   - libtiff=4.2.0
   - libtool=2.4.6
   - libunwind=1.4.0
   - libuuid=2.32.1
+  - libvorbis=1.3.7
   - libwebp=1.2.0
   - libwebp-base=1.2.0
   - libxcb=1.13
@@ -269,7 +274,7 @@ dependencies:
   - mysql-common=8.0.22
   - mysql-libs=8.0.22
   - mysqlclient=2.0.3
-  - nabs=1.1.1
+  - nabs=1.1.2
   - nbclient=0.5.3
   - nbconvert=6.0.7
   - nbformat=5.1.3
@@ -282,7 +287,7 @@ dependencies:
   - nose=1.3.7
   - notebook=6.3.0
   - nspr=4.30
-  - nss=3.63
+  - nss=3.64
   - numba=0.53.1
   - numcodecs=0.7.3
   - numexpr=2.7.3
@@ -313,7 +318,7 @@ dependencies:
   - pathspec=0.8.1
   - patsy=0.5.1
   - pcaspy=0.7.3
-  - pcdscalc=0.2.0
+  - pcdscalc=0.3.0
   - pcdsdaq=2.3.4
   - pcdsdevices=4.4.0
   - pcdsutils=0.4.2
@@ -326,7 +331,7 @@ dependencies:
   - pillow=8.1.2
   - pims=0.5
   - pint=0.17
-  - pip=21.0.1
+  - pip=21.1
   - pixman=0.40.0
   - pkginfo=1.7.0
   - pluggy=0.13.1
@@ -335,7 +340,7 @@ dependencies:
   - pooch=1.3.0
   - portaudio=19.6.0
   - poyo=0.5.0
-  - pre-commit=2.12.0
+  - pre-commit=2.12.1
   - prettytable=2.1.0
   - prometheus_client=0.10.1
   - prompt-toolkit=3.0.18
@@ -351,7 +356,7 @@ dependencies:
   - pthread-stubs=0.4
   - ptyprocess=0.7.0
   - py=1.10.0
-  - py-cpuinfo=7.0.0
+  - py-cpuinfo=8.0.0
   - py-lief=0.10.1
   - py-opencv=4.5.1
   - py-spy=0.3.5
@@ -372,7 +377,7 @@ dependencies:
   - pyflakes=2.3.1
   - pygithub=1.53
   - pygments=2.8.1
-  - pyjwt=2.0.1
+  - pyjwt=2.1.0
   - pykerberos=1.2.1
   - pymongo=3.11.0
   - pyopenssl=20.0.1
@@ -389,7 +394,7 @@ dependencies:
   - pysocks=1.7.1
   - pytables=3.6.1
   - pytest=6.2.3
-  - pytest-benchmark=3.2.3
+  - pytest-benchmark=3.4.1
   - pytest-qt=3.3.0
   - pytest-timeout=1.4.2
   - python=3.8.8
@@ -400,7 +405,7 @@ dependencies:
   - python-libarchive-c=2.9
   - python-slugify=4.0.1
   - python_abi=3.8
-  - pytmc=2.9.0
+  - pytmc=2.9.1
   - pytz=2021.1
   - pyviz_comms=2.0.1
   - pywavelets=1.1.1
@@ -412,7 +417,7 @@ dependencies:
   - qtconsole=5.0.3
   - qtpy=1.9.0
   - qtpyinheritance=0.0.1
-  - readline=8.0
+  - readline=8.1
   - regex=2021.4.4
   - reportlab=3.5.67
   - requests=2.25.1
@@ -425,13 +430,13 @@ dependencies:
   - schema=0.7.4
   - scikit-image=0.18.1
   - scikit-learn=0.24.1
-  - scipy=1.6.2
-  - scrypt=0.8.17
+  - scipy=1.6.3
+  - scrypt=0.8.18
   - seaborn=0.11.1
   - seaborn-base=0.11.1
   - send2trash=1.5.0
   - setuptools=49.6.0
-  - shellcheck=0.7.1
+  - shellcheck=0.7.2
   - simplejson=3.17.2
   - six=1.15.0
   - slicerator=1.0.0
@@ -449,8 +454,8 @@ dependencies:
   - sphinxcontrib-jsmath=1.0.1
   - sphinxcontrib-qthelp=1.0.3
   - sphinxcontrib-serializinghtml=1.1.4
-  - sqlalchemy=1.4.8
-  - sqlite=3.35.4
+  - sqlalchemy=1.4.11
+  - sqlite=3.35.5
   - statsmodels=0.12.2
   - suitcase-mongo=0.2.0
   - suitcase-msgpack=0.2.4
@@ -483,7 +488,7 @@ dependencies:
   - unidecode=1.2.0
   - urllib3=1.26.4
   - versioneer=0.19
-  - virtualenv=20.4.3
+  - virtualenv=20.4.4
   - vsts-python-api=0.1.22
   - wcwidth=0.2.5
   - webencodings=0.5.1
@@ -510,11 +515,11 @@ dependencies:
   - xz=5.2.5
   - yaml=0.2.5
   - yaml-cpp=0.6.3
-  - zarr=2.7.0
+  - zarr=2.8.1
   - zeromq=4.3.4
   - zfp=0.5.5
   - zict=2.0.0
   - zipp=3.4.1
   - zlib=1.2.11
   - zstd=1.4.9
-prefix: /cds/home/z/zlentz/miniconda3/envs/pcds-4.1.2
+prefix: /cds/home/z/zlentz/miniconda3/envs/pcds-4.1.3

envs/pcds/keep-updated.txt

@@ -26,5 +26,4 @@ pyepics
 pytmc
 tc_release
 timechart
-transfocate
 typhos