Skip to content

task_label_projection 2.0.0

Latest
Latest
Compare
Choose a tag to compare
@rcannood rcannood released this 11 Feb 13:08
v2.0.0
7fb977e

A major update to the OpenProblems framework, switching from a Python-based framework to a Viash + Nextflow-based framework. This update features the same concepts as the previous version, but with a new implementation that is more flexible, scalable, and maintainable.

Migration

  • Added expected input/output interfaces in src/api and document them in README.md.

  • Store common resources used across tasks in a git submodule common.

  • Methods, metrics, workflows and other components are implemented as Viash components with a per-component Docker image.

New functionality

  • Switched to larger datasets derived from CELLxGENE.

  • Added scGPT zero shot (PR #2).

  • Added scGPT fine-tuned (PR #3).

  • Added SCimilarity (PR #4).

  • Added UCE method (PR #6).

  • Added geneformer (PR #7, #16).

  • Added scPRINT (PR #8).

Major changes

  • Updated the task API (PR #9).

Bug fixes

  • Convert to dgCMatrix in SingleR (PR #5).

  • Multiple fixes prior to release (PR #11, #13, #14, #15, #17).

Documentation

  • Update README (PR #10).
Assets 2
Loading