Merge pull request #129 from nordic-institute/OPMONDEV-187-update-deps

chore: Update dependencies to latest versions compatible with python 3.8

Refs: OPMONDEV-187

.github/workflows/run-tests.yml

@@ -1,5 +1,5 @@
 name: X-Road Metrics Tests
-on: [pull_request]
+on: [workflow_dispatch, pull_request]
 jobs:
   Test-Anonymizer:
     name: Anonymizer Tests

analysis_module/setup.py

@@ -24,10 +24,13 @@
 
 from setuptools import setup, find_packages
 
+# The following dependencies has newer versions, but require Python 3.9 or higher
+#   pandas, numpy, scipy
+
 requirements = [
-    'dill==0.3.8',
-    'pymongo==4.6.3',
-    'pyyaml==6.0.1',
+    'dill==0.3.9',
+    'pymongo==4.9.1',
+    'pyyaml==6.0.2',
     'numpy==1.24.4',
     'pandas==2.0.3',
     'scipy==1.10.1',

analysis_ui_module/setup.py

@@ -24,11 +24,14 @@
 
 from setuptools import setup, find_packages
 
+# The following dependencies has newer versions, but require Python 3.9 or higher
+#   numpy
+
 requirements = [
-    'dill==0.3.8',
+    'dill==0.3.9',
     'django==2.2.28',
-    'pymongo==4.6.3',
-    'pyyaml==6.0.1',
+    'pymongo==4.9.1',
+    'pyyaml==6.0.2',
     'numpy==1.24.4'
 ]
 

anonymizer_module/setup.py

@@ -25,9 +25,9 @@
 from setuptools import setup, find_packages
 
 requirements = [
-    'setuptools==67.4.0',
-    'pymongo==4.6.3',
-    'pyyaml==6.0.1',
+    'setuptools==75.1.0',
+    'pymongo==4.9.1',
+    'pyyaml==6.0.2',
     'psycopg2==2.9.9',
     'python-dateutil==2.9.0.post0',
 ]

collector_module/setup.py

@@ -25,12 +25,12 @@
 from setuptools import setup
 
 requirements = [
-    'setuptools==67.4.0',
-    'pymongo==4.6.3',
+    'setuptools==75.1.0',
+    'pymongo==4.9.1',
     'requests==2.32.3',
-    'tqdm==4.66.4',
-    'pyyaml==6.0.1',
-    'urllib3==1.26.18',
+    'tqdm==4.66.5',
+    'pyyaml==6.0.2',
+    'urllib3==2.2.3',
 ]
 
 classifiers = [

corrector_module/opmon_corrector/database_manager.py

@@ -29,6 +29,8 @@
 import pymongo
 from typing import List, Optional
 
+from pymongo.database import Database
+
 from .logger_manager import LoggerManager
 from . import __version__
 
@@ -80,7 +82,7 @@ def get_mongo_uri(settings: dict) -> str:
         host = settings['mongodb']['host']
         return f'mongodb://{user}:{password}@{host}/auth_db'
 
-    def get_query_db(self) -> pymongo.database.Database:
+    def get_query_db(self) -> Database:
         """
         Gets the specific (XRoadInstance) query database .
         :return: Returns the specific query database.

corrector_module/setup.py

@@ -25,9 +25,9 @@
 from setuptools import setup
 
 requirements = [
-    'setuptools==67.4.0',
-    'pymongo==4.6.3',
-    'pyyaml==6.0.1',
+    'setuptools==75.1.0',
+    'pymongo==4.9.1',
+    'pyyaml==6.0.2',
 ]
 
 classifiers = [

opendata_collector_module/setup.py

@@ -25,12 +25,12 @@
 from setuptools import setup
 
 requirements = [
-    'setuptools==67.4.0',
-    'pymongo==4.6.3',
+    'setuptools==75.1.0',
+    'pymongo==4.9.1',
     'requests==2.32.3',
-    'tqdm==4.66.4',
-    'pyyaml==6.0.1',
-    'urllib3==1.26.18',
+    'tqdm==4.66.5',
+    'pyyaml==6.0.2',
+    'urllib3==2.2.3',
 ]
 
 classifiers = [

opendata_module/setup.py

@@ -25,11 +25,11 @@
 from setuptools import setup, find_packages
 
 requirements = [
-    'setuptools==67.4.0',
-    'dill==0.3.8',
+    'setuptools==75.1.0',
+    'dill==0.3.9',
     'django==3.2.20',
-    'pymongo==4.6.3',
-    'pyyaml==6.0.1',
+    'pymongo==4.9.1',
+    'pyyaml==6.0.2',
     'psycopg2==2.9.9',
     'python-dateutil==2.9.0.post0',
 ]

reports_module/setup.py

@@ -24,19 +24,23 @@
 
 from setuptools import setup, find_packages
 
+# The following dependencies has newer versions, but require Python 3.9 or higher
+#   matplotlib, pandas, weasyprint, numpy, contourpy
+
 requirements = [
     'markupsafe==2.1.5',
     'Jinja2==3.1.4',
-    'matplotlib==3.5.3',
+    'matplotlib==3.7.5',
     'pandas==2.0.3',
     'weasyprint==61.2',
-    'Pillow==10.3.0',
-    'pymongo==4.6.3',
-    'pyyaml==6.0.1',
+    'Pillow==10.4.0',
+    'pymongo==4.9.1',
+    'pyyaml==6.0.2',
     'requests==2.32.3',
     'tinycss==0.4',
-    'jsonschema==4.22.0',
+    'jsonschema==4.23.0',
     'numpy==1.24.4',
+    'contourpy==1.1.1',
 ]
 
 classifiers = [