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Classify arrays

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nyoungb2 edited this page Sep 19, 2013 · 2 revisions

Classify array subtypes based on direct repeats. A naive bayesian classifier based on kmer composition of direct repeats is used.

Classifying all 'rogue' (no operon) arrays

$ CLdb_classifyArraysByDR.pl -d CLdb.sqlite

Get idea of classification accuracy

$ CLdb_classifyArraysByDR_validate.pl -da CLdb.sqlite