update modules config

nf-core · Aug 20, 2024 · 79234af · 79234af
1 parent 3145022
commit 79234af
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -159,22 +159,22 @@ process {
         ext.args2 = '-f ID PRIMER ERROR --outname cregion_alignment'
     }
 
-    withName: PRESTO_MASKPRIMERS_EXTRACT {
+    withName: 'PRESTO_MASKPRIMERS_EXTRACT*' {
         publishDir = [
             path: { "${params.outdir}/presto/02-maskprimers/${meta.id}" },
             mode: params.publish_dir_mode,
             pattern: "*{txt,log,tab}"
         ]
-        ext.args = '--barcode --bf BARCODE'
         ext.args2 = '-f ID PRIMER ERROR PRSTART'
     }
 
-    withName: PRESTO_MASKPRIMERS_POSTASSEMBLY_SANS_UMI {
+    withName: 'PRESTO_MASKPRIMERS_SCORE_SANSUMI*' {
         publishDir = [
             path: { "${params.outdir}/presto/03-maskprimers/${meta.id}" },
             mode: params.publish_dir_mode,
             pattern: "*{txt,log,tab}"
         ]
+        ext.args2 = '-f ID PRIMER ERROR'
     }
 
     withName: PRESTO_PAIRSEQ {