Move demos to dediated examples repo

The flu case study was already included in the `examples` repo at https://github.com/morloc-project/examples. I don't need to maintain duplicates. I've also moved over the sequence analysis repo to that folder. The morloc main repo should contain as little excess material as possible to minimize the download size. There may be hundreds of examples in the future, and many may have modest datasets associated. They should live in their own place. `morloc` main will contain a broad automated test suite and benchmarking suite (soon to be automated). It should contain the minimum required for testing in continuous integration. All these tests will be required to pass for the latest version of morloc (and perhaps optionally for past ones as well for backwards compatibility). The examples may be pegged to older versions of the compiler and may have their own dedicated containers.
morloc-project · Jan 2, 2025 · f1855f8 · f1855f8
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diff --git a/README.md b/README.md
@@ -10,8 +10,9 @@ imported from foreign languages and unified under a common type system.
 See [the manual](https://morloc-project.github.io/docs) for more information.
 
 If you want to get straight to playing with code, go through the steps in the
-installation section and then visit the project `demo/01_sequence_analysis`
-or the less documented `demo/02_flu`.
+installation section and then visit `morloc` examples repo
+(here)[https://github.com/morloc-project/examples]. The `fasta` example is a
+well-annotated is a nice place to start.
 
 ## Status
 
@@ -21,11 +22,11 @@ welcome.
 
 ## Running morloc
 
-`morloc` should run on Linux and macOS. For Windows, I suggest using [Windows Subsystem for
+`morloc` should run on Linux and MacOS. For Windows, I suggest using [Windows Subsystem for
 Linux](https://learn.microsoft.com/en-us/windows/wsl/install).
 
-The easiest way to use `morloc` is through containers. Unless you love running
-with daemons, I recommend using podman.
+The easiest way to start using `morloc` is through containers. Unless you love
+running with daemons, I recommend using podman.
 
 A container with the morloc executable and batteries included can be retrieved
 from the GitHub container registry as follows:

diff --git a/demos/01_sequence_analysis/Makefile b/demos/01_sequence_analysis/Makefile
diff --git a/demos/01_sequence_analysis/README.md b/demos/01_sequence_analysis/README.md
diff --git a/demos/01_sequence_analysis/bio/bio.hpp b/demos/01_sequence_analysis/bio/bio.hpp
diff --git a/demos/01_sequence_analysis/bio/main.loc b/demos/01_sequence_analysis/bio/main.loc
diff --git a/demos/01_sequence_analysis/bio/package.yaml b/demos/01_sequence_analysis/bio/package.yaml
diff --git a/demos/01_sequence_analysis/fasta/fastaIO.hpp b/demos/01_sequence_analysis/fasta/fastaIO.hpp
diff --git a/demos/01_sequence_analysis/fasta/main.loc b/demos/01_sequence_analysis/fasta/main.loc
diff --git a/demos/01_sequence_analysis/fasta/package.yaml b/demos/01_sequence_analysis/fasta/package.yaml
diff --git a/demos/01_sequence_analysis/main.loc b/demos/01_sequence_analysis/main.loc
diff --git a/demos/01_sequence_analysis/test.fasta b/demos/01_sequence_analysis/test.fasta
diff --git a/demos/02_flu/.gitignore b/demos/02_flu/.gitignore
diff --git a/demos/02_flu/Makefile b/demos/02_flu/Makefile
diff --git a/demos/02_flu/data/config.json b/demos/02_flu/data/config.json
diff --git a/demos/02_flu/data/refs.txt b/demos/02_flu/data/refs.txt
diff --git a/demos/02_flu/lib/classify/main.loc b/demos/02_flu/lib/classify/main.loc
diff --git a/demos/02_flu/lib/flutypes/main.loc b/demos/02_flu/lib/flutypes/main.loc