fix tests in test_gold_api_ops.py

microbiomedata · Dec 12, 2024 · 4004ca6 · 4004ca6
1 parent 7ea94eb
commit 4004ca6
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/tests/test_ops/test_gold_api_ops.py b/tests/test_ops/test_gold_api_ops.py
@@ -31,7 +31,8 @@ def op_context(client_config):
         op_config={
             "study_id": "Gs0149396",
             "study_type": "research_study",
-            "gold_nmdc_instrument_mapping_file_url": "https://raw.githubusercontent.com/microbiomedata/berkeley-schema-fy24/refs/heads/main/assets/misc/gold_seqMethod_to_nmdc_instrument_set.tsv",
+            "gold_nmdc_instrument_mapping_file_url": "https://raw.githubusercontent.com/microbiomedata/nmdc-schema/refs/heads/main/assets/misc/gold_seqMethod_to_nmdc_instrument_set.tsv",
+            "include_field_site_info": False,
         },
     )
 
@@ -55,7 +56,7 @@ def test_gold_biosamples_by_study(client_config, op_context):
             ],
         )
 
-        (study_id, _, _) = get_gold_study_pipeline_inputs(op_context)
+        (study_id, _, _, _) = get_gold_study_pipeline_inputs(op_context)
         gold_biosamples_by_study(op_context, study_id)
 
         assert (
@@ -72,7 +73,7 @@ def test_gold_projects_by_study(client_config, op_context):
             json=[{"projectGoldId": "Gp123456789"}],
         )
 
-        (study_id, _, _) = get_gold_study_pipeline_inputs(op_context)
+        (study_id, _, _, _) = get_gold_study_pipeline_inputs(op_context)
         gold_projects_by_study(op_context, study_id)
 
         assert len(mock.request_history) == 1
@@ -87,7 +88,7 @@ def test_gold_analysis_projects_by_study(client_config, op_context):
             json=[{"apGoldId": "Ga0499994"}],
         )
 
-        (study_id, _, _) = get_gold_study_pipeline_inputs(op_context)
+        (study_id, _, _, _) = get_gold_study_pipeline_inputs(op_context)
         gold_analysis_projects_by_study(op_context, study_id)
 
         assert len(mock.request_history) == 1
@@ -101,7 +102,7 @@ def test_gold_study(client_config, op_context):
             f'{client_config["base_url"]}/studies', json=[{"studyGoldId": "Gs0149396"}]
         )
 
-        (study_id, _, _) = get_gold_study_pipeline_inputs(op_context)
+        (study_id, _, _, _) = get_gold_study_pipeline_inputs(op_context)
         gold_study(op_context, study_id)
 
         assert len(mock.request_history) == 1