Update index.rst

microbiomedata · Nov 16, 2024 · e6eb69a · e6eb69a
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Showing 1 changed file with 8 additions and 9 deletions.
diff --git a/docs/index.rst b/docs/index.rst
@@ -44,20 +44,19 @@ Hardware Requirements:
 Workflow Dependencies
 ---------------------
 
-Third party software (This is included in the Docker image.)  
+Third party software (These are included in the Docker image.)  
 
 * SAMTOOLS v1.15 (MIT/Expat)
 * readCov_metaTranscriptome_2k20.pl
 
 
-Sample datasets
----------------
-
-+ Processed Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (`SRR11678315 <https://www.ncbi.nlm.nih.gov/sra/SRX8239222>`_) with `metadata available in the NMDC Data Portal <https://data.microbiomedata.org/details/study/nmdc:sty-11-dcqce727>`_. 
- + The processed BAM file is available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/assembly_output/SRR11678315-int-0.1_pairedMapped_sorted.bam>`_
- + The proccessed GFF functional annotation file is available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/SRR11678315-int-0.1_functional_annotation.gff>`_
- + The generated mapping file file is available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/SRR11678315-int-0.1_contig_names_mapping.tsv>`_
- + The sample read count outputs are available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/readcounts_output/>`_
+Sample datasets   
+--------------------- 
+* Processed Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (`SRR11678315 <https://www.ncbi.nlm.nih.gov/sra/SRX8239222>`_) with `metadata available in the NMDC Data Portal <https://data.microbiomedata.org/details/study/nmdc:sty-11-dcqce727>`_ 
+   * The processed BAM file is available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/assembly_output/SRR11678315-int-0.1_pairedMapped_sorted.bam>`_
+   * The proccessed GFF functional annotation file is available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/SRR11678315-int-0.1_functional_annotation.gff>`_
+   * The generated mapping file file is available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/annotation_output/SRR11678315-int-0.1_contig_names_mapping.tsv>`_
+   * The sample read count outputs are available `here <https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315/readcounts_output/>`_