add contributing docs and install script

README.md

@@ -2,6 +2,8 @@
 
 [![codecov](https://codecov.io/gh/mbhall88/drprg/branch/main/graph/badge.svg?token=2WAA6MZRKK)](https://codecov.io/gh/mbhall88/drprg)
 [![Rust](https://github.com/mbhall88/drprg/actions/workflows/rust.yml/badge.svg?branch=main)](https://github.com/mbhall88/drprg/actions/workflows/rust.yml)
+[![github release version](https://img.shields.io/github/v/release/mbhall88/drprg)](https://github.com/mbhall88/drprg/releases)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
 
 Full documentation: <https://mbh.sh/drprg/>
 

docs/src/SUMMARY.md

@@ -15,3 +15,6 @@
   - [VCF to build reference graph](./guide/build/vcf.md)
   - [Catalogue of mutations](./guide/build/catalogue.md)
   - [Expert rules](./guide/build/expert.md)
+
+[Contributing](./contributing.md)
+[Changes](../../CHANGELOG.md)

docs/src/contributing.md

@@ -0,0 +1,7 @@
+# Contributing
+
+If you would like to contribute to Dr. PRG, feel free to open a pull request with
+suggested changes, or even raise an issue to discuss potential contributions.
+
+If you would like to contribute a prebuilt index for a species, head on over
+to https://github.com/mbhall88/drprg-index

docs/src/installation.md

@@ -2,6 +2,10 @@
 
 ## Conda
 
+[![Conda (channel only)](https://img.shields.io/conda/vn/bioconda/drprg)](https://anaconda.org/bioconda/drprg)
+[![bioconda version](https://anaconda.org/bioconda/drprg/badges/platforms.svg)](https://anaconda.org/bioconda/drprg)
+![Conda](https://img.shields.io/conda/dn/bioconda/drprg)
+
 ```
 conda install drprg
 ```
@@ -37,6 +41,59 @@ To run `drprg` using the above container with [Singularity]
 $ singularity exec "docker://$URI" drprg --help
 ```
 
+## Prebuilt binary
+
+If you use the prebuilt binary, you must have the [external dependecies](#dependencies) installed separately.
+
+```shell
+curl -sSL drprg.mbh.sh | sh
+# or with wget
+wget -nv -O - drprg.mbh.sh | sh
+```
+
+You can also pass options to the script like so
+
+```
+$ curl -sSL drprg.mbh.sh | sh -s -- --help
+install.sh [option]
+
+Fetch and install the latest version of drprg, if drprg is already
+installed it will be updated to the latest version.
+
+Options
+        -V, --verbose
+                Enable verbose output for the installer
+
+        -f, -y, --force, --yes
+                Skip the confirmation prompt during installation
+
+        -p, --platform
+                Override the platform identified by the installer
+
+        -b, --bin-dir
+                Override the bin installation directory [default: /usr/local/bin]
+
+        -a, --arch
+                Override the architecture identified by the installer [default: x86_64]
+
+        -B, --base-url
+                Override the base URL used for downloading releases [default: https://github.com/mbhall88/drprg/releases]
+
+        -h, --help
+                Display this help message
+```
+
+
+## Cargo
+
+[![Crates.io](https://img.shields.io/crates/v/drprg.svg)](https://crates.io/crates/drprg)
+
+If install via cargo, you must have the [external dependecies](#dependencies) installed separately.
+
+```
+$ cargo install drprg
+```
+
 ## Local
 
 **Minimum supported Rust version**: `1.65.0`
@@ -76,7 +133,6 @@ changed by specifying a path to `EXTDIR` when installing the external dependenci
 $ just deps EXTDIR="some/other/dir"
 ```
 
-
 [pandora]: https://github.com/rmcolq/pandora
 [mafft]: https://mafft.cbrc.jp/alignment/software/
 [makeprg]: https://github.com/leoisl/make_prg/