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knaaptime · Dec 3, 2024 · f74056a · f74056a
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diff --git a/slides/index.html b/slides/index.html
@@ -1023,6 +1023,7 @@ <h1>why</h1>
 </section>
 <section id="what-tldr" class="slide level2 smaller">
 <h2>what (tl;dr)</h2>
+<p><a href="https://github.com/knaaptime/rypyrx" class="uri">https://github.com/knaaptime/rypyrx</a></p>
 <ul>
 <li>this repo demonstrates a reproducible research project that can (should!) run anywhere, including just in a github codespaces instance (coding on your ipad!)</li>
 <li>this also works nicely for teaching workshops</li>
@@ -1106,10 +1107,7 @@ <h2>the <code>notebooks</code> directory</h2>
 </section>
 <section id="run-jupyter" class="slide level2">
 <h2>run jupyter</h2>
-<ul>
-<li><code>cd notebooks</code></li>
-<li><code>pixi run jupyter lab</code></li>
-</ul>
+<p><code>pixi run jupyter lab</code></p>
 </section>
 <section id="edit-notebooks" class="slide level2">
 <h2>edit notebooks</h2>
@@ -1137,8 +1135,8 @@ <h2>the index.qmd file</h2>
 <section id="generate-the-paper" class="slide level2">
 <h2>generate the paper</h2>
 <ul>
-<li><code>cd paper</code></li>
-<li><code>pixi run quarto render</code></li>
+<li>edit stuff in the <code>paper</code> directory</li>
+<li><code>pixi run quarto render paper</code></li>
 </ul>
 </section>
 <section id="output" class="slide level2 smaller">
@@ -1174,9 +1172,8 @@ <h2>go to <code>pages</code> settings</h2>
 <h2>edit the slides</h2>
 <p>the <code>slides</code> directory is another standalone <code>quarto</code> project</p>
 <ul>
-<li><code>cd slides</code></li>
-<li>edit the index.qmd file</li>
-<li><code>pixi run quarto render</code></li>
+<li>edit the <code>index.qmd</code> file in <code>slides</code></li>
+<li><code>pixi run quarto render slides</code></li>
 </ul>
 </section>
 <section id="commit-the-directory" class="slide level2 smaller">

diff --git a/slides/index.qmd b/slides/index.qmd
@@ -30,6 +30,8 @@ date: today  # fix to a real date when final
 
 ## what (tl;dr) {.smaller}
 
+<https://github.com/knaaptime/rypyrx>
+
 - this repo demonstrates a reproducible research project that can (should!) run anywhere, including just in a github codespaces instance (coding on your ipad!)
 - this also works nicely for teaching workshops
 - the bones are just `pixi` and `quarto`

diff --git a/slides/search.json b/slides/search.json
@@ -4,7 +4,7 @@
     "href": "index.html#what-tldr",
     "title": "Reproducible Research Environments",
     "section": "what (tl;dr)",
-    "text": "what (tl;dr)\n\nthis repo demonstrates a reproducible research project that can (should!) run anywhere, including just in a github codespaces instance (coding on your ipad!)\nthis also works nicely for teaching workshops\nthe bones are just pixi and quarto\nthe magic is the .devcontainer and .github configuration files"
+    "text": "what (tl;dr)\nhttps://github.com/knaaptime/rypyrx\n\nthis repo demonstrates a reproducible research project that can (should!) run anywhere, including just in a github codespaces instance (coding on your ipad!)\nthis also works nicely for teaching workshops\nthe bones are just pixi and quarto\nthe magic is the .devcontainer and .github configuration files"
   },
   {
     "objectID": "index.html#end-result",
@@ -74,7 +74,7 @@
     "href": "index.html#run-jupyter",
     "title": "Reproducible Research Environments",
     "section": "run jupyter",
-    "text": "run jupyter\n\ncd notebooks\npixi run jupyter lab"
+    "text": "run jupyter\npixi run jupyter lab"
   },
   {
     "objectID": "index.html#edit-notebooks",
@@ -102,7 +102,7 @@
     "href": "index.html#generate-the-paper",
     "title": "Reproducible Research Environments",
     "section": "generate the paper",
-    "text": "generate the paper\n\ncd paper\npixi run quarto render"
+    "text": "generate the paper\n\nedit stuff in the paper directory\npixi run quarto render paper"
   },
   {
     "objectID": "index.html#output",
@@ -137,7 +137,7 @@
     "href": "index.html#edit-the-slides",
     "title": "Reproducible Research Environments",
     "section": "edit the slides",
-    "text": "edit the slides\nthe slides directory is another standalone quarto project\n\ncd slides\nedit the index.qmd file\npixi run quarto render"
+    "text": "edit the slides\nthe slides directory is another standalone quarto project\n\nedit the index.qmd file in slides\npixi run quarto render slides"
   },
   {
     "objectID": "index.html#commit-the-directory",