added verbose mode for GitHub Actions console #21
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| name: Validate Logic Profile | |
| on: | |
| push: | |
| branches: | |
| - main # Trigger the pipeline on pushes to the main branch | |
| jobs: | |
| reason-ontology: | |
| runs-on: ubuntu-latest # Required base runner | |
| container: | |
| image: obolibrary/robot:latest # Use the ROBOT Docker image directly | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 # Download repository files into the container | |
| - name: Run ROBOT Reasoning | |
| run: | | |
| robot reason \ | |
| --catalog "catalog-v001.xml" \ | |
| --input "cco-d-acts.ttl" \ | |
| --output "inferred-cco-d-acts.ttl" -vvv | |
| - name: Save Output | |
| run: | | |
| mkdir -p output | |
| mv inferred-cco-d-acts.ttl output/ | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: inferred-ontology | |
| path: output/inferred-cco-d-acts.ttl | |
| ontology-validate-dl: | |
| runs-on: ubuntu-latest | |
| container: obolibrary/robot:latest | |
| outputs: | |
| validation-status: ${{ steps.validate-dl.outcome }} # Pass step outcome as a job output | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Run ontology DL profile validation | |
| id: validate-dl # Assign ID to the step | |
| continue-on-error: true # Allow this step to continue even if it fails | |
| run: | | |
| robot validate-profile \ | |
| --profile DL \ | |
| --catalog "catalog-v001.xml" \ | |
| --input "cco-d-acts.ttl" \ | |
| --output "cco-d-acts-dl-validation.txt" -vvv | |
| - name: Upload Validation Results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dl-validation-results | |
| path: cco-d-acts-dl-validation.txt | |
| ontology-validate-full: | |
| runs-on: ubuntu-latest | |
| needs: ontology-validate-dl | |
| if: needs.ontology-validate-dl.outputs.validation-status == 'failure' # Run only if the previous job failed | |
| container: | |
| image: obolibrary/robot:latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Run ontology Full profile validation | |
| run: | | |
| robot validate-profile \ | |
| --profile Full \ | |
| --catalog "catalog-v001.xml" \ | |
| --input "cco-d-acts.ttl" \ | |
| --output "cco-d-acts-full-validation.txt" -vvv | |
| - name: Upload Validation Results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: full-validation-results | |
| path: cco-d-acts-full-validation.txt |