Simple python code that reproduces the results obtained in the paper 'Theoretical microbial ecology without species' by Mikhail Tikhonov. DOI: https://doi.org/10.1103/PhysRevE.96.032410
The classes and the functions are contained in the folder py_module. The file patch.ipynb
contains the routine for the single patch and a brief explanation of the results for the multi patch simulations.
The folder random
and removed
contains the routine for the multi patch results and a couple of examples with different parameters
Don't know whether it is the best implementation of the code but it is pretty straightforward to understand