Release (#120)

* Update teardown and rebuild stage (#115)

Now determines which UUID to pass to the picsureui_settings.json file based on the global param is_open_access.

* [ALS-6225] Add new variables to Teardown and Rebuild stage (#117)

Enhanced the TearDown and Rebuild stage environment configuration by adding two new variables, "app_acct_id" and "app_user_secret_name". These additional variables will provide greater flexibility during the teardown and rebuild stage operations.

* Add run bash functions (#118)

* [ALS - 6004] - Needs to be Groovy System Script (#119)

* Add run bash functions

* Needs to be Groovy SYSTEM Script

---------

Co-authored-by: Gcolon021 <34667267+Gcolon021@users.noreply.github.com>

jenkins-docker/jobs/Import HPDS VCF Data/config.xml

@@ -4,7 +4,7 @@
   <description></description>
   <keepDependencies>false</keepDependencies>
   <properties/>
-  <scm class="hudson.plugins.git.GitSCM" plugin="git@5.2.0">
+  <scm class="hudson.plugins.git.GitSCM" plugin="git@5.2.1">
     <configVersion>2</configVersion>
     <userRemoteConfigs>
       <hudson.plugins.git.UserRemoteConfig>
@@ -24,9 +24,23 @@
   <disabled>false</disabled>
   <blockBuildWhenDownstreamBuilding>false</blockBuildWhenDownstreamBuilding>
   <blockBuildWhenUpstreamBuilding>false</blockBuildWhenUpstreamBuilding>
+  <jdk>(System)</jdk>
   <triggers/>
   <concurrentBuild>false</concurrentBuild>
   <builders>
+    <hudson.plugins.groovy.SystemGroovy plugin="groovy@457.v99900cb_85593">
+      <source class="hudson.plugins.groovy.StringSystemScriptSource">
+        <script plugin="script-security@1336.vf33a_a_9863911">
+          <script>import jenkins.*
+import jenkins.model.*
+import hudson.*
+import hudson.model.*
+
+def bashFunctionsJob = Jenkins.instance.getItemByFullName(&quot;Bash_Functions&quot;).scheduleBuild2(0).get()</script>
+          <sandbox>false</sandbox>
+        </script>
+      </source>
+    </hudson.plugins.groovy.SystemGroovy>
     <hudson.tasks.Shell>
       <command>#!/bin/bash
 set -e
@@ -44,7 +58,8 @@ for script_file in &quot;$source_scripts_folder&quot;*.sh; do
 done
 SOURCE_FILE_S3_LINK=`grep source_genomic_dataset_s3_url build-spec.json | cut -d &apos;:&apos; -f 2,3 | sed &apos;s/&quot;//g&apos;`
 
-[ -d &apos;all&apos; ] || mkdir all/
+rm -rf all/
+mkdir all/
 assume_role &quot;arn:aws:iam::736265540791:role/curated-datasets-s3-role&quot;
 aws s3 cp --recursive $SOURCE_FILE_S3_LINK all/
 
@@ -55,5 +70,12 @@ aws s3 --sse=AES256 cp --recursive all/ s3://${stack_s3_bucket}/data/`git blame
     </hudson.tasks.Shell>
   </builders>
   <publishers/>
-  <buildWrappers/>
+  <buildWrappers>
+    <hudson.plugins.ws__cleanup.PreBuildCleanup plugin="ws-cleanup@0.45">
+      <deleteDirs>false</deleteDirs>
+      <cleanupParameter></cleanupParameter>
+      <externalDelete></externalDelete>
+      <disableDeferredWipeout>false</disableDeferredWipeout>
+    </hudson.plugins.ws__cleanup.PreBuildCleanup>
+  </buildWrappers>
 </project>

jenkins-docker/jobs/Teardown and Rebuild Stage Environment/config.xml

@@ -228,7 +228,10 @@ if $isDestroyOnly; then
      -var="picsure_db_host=${picsure_db_host}" \
      -var="picsure_db_password=${picsure_db_password}" \
      -var="picsure_db_username=${picsure_db_username}" \
-     -var="pic_sure_resource_id=${picsure_resource_uuid}" || true
+     -var="pic_sure_resource_id=${picsure_resource_uuid}" \
+     -var="app_acct_id=${app_acct_id}" \
+     -var="app_user_secret_name=${database_app_user_secret_name}" || true
+
 
   reset_role
 
@@ -277,7 +280,10 @@ else
      -var="picsure_db_host=${picsure_db_host}" \
      -var="picsure_db_password=${picsure_db_password}" \
      -var="picsure_db_username=${picsure_db_username}" \
-     -var="pic_sure_resource_id=${picsure_resource_uuid}" || true
+     -var="pic_sure_resource_id=${picsure_resource_uuid}" \
+     -var="app_acct_id=${app_acct_id}" \
+     -var="app_user_secret_name=${database_app_user_secret_name}" || true
+
 
   terraform apply -auto-approve \
      -var="dataset_s3_object_key=${dataset_s3_object_key}"  \
@@ -320,7 +326,10 @@ else
      -var="picsure_db_host=${picsure_db_host}" \
      -var="picsure_db_password=${picsure_db_password}" \
      -var="picsure_db_username=${picsure_db_username}" \
-     -var="pic_sure_resource_id=${picsure_resource_uuid}" || true
+     -var="pic_sure_resource_id=${picsure_resource_uuid}" \
+     -var="app_acct_id=${app_acct_id}" \
+     -var="app_user_secret_name=${database_app_user_secret_name}" || true
+
 
   reset_role