Merge remote-tracking branch 'upstream/master'

gersteinlab · Feb 11, 2020 · 277837f · 277837f
2 parents b078100 + e0849a3
commit 277837f
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Showing 4 changed files with 344 additions and 173 deletions.
diff --git a/starrpeaker/3_procBam.py b/starrpeaker/3_procBam.py
@@ -22,7 +22,7 @@
 parser.add_argument('-o', '--output', help='STARR-seq Output BAM File', required=True)
 
 ### optional args
-parser.add_argument('--min', help='Minimum Insert Size', required=False, default=100)
+parser.add_argument('--min', help='Minimum Insert Size', required=False, default=200)
 parser.add_argument('--max', help='Maximum Insert Size', required=False, default=1000)
 
 args = parser.parse_args()

diff --git a/starrpeaker/4_callPeak.py b/starrpeaker/4_callPeak.py
@@ -29,7 +29,7 @@
                                           bedFile=args.prefix + ".bin.bed",
                                           bctFile=args.prefix + ".bam.bct",
                                           covFile=args.prefix + ".cov.tsv",
-                                          bwFile=args.prefix + ".bam.bct.1.bw",
+                                          bwFile=args.prefix + ".bam.bct.1.all.bw",
                                           chromSize=args.chromsize,
                                           threshold=args.threshold,
                                           mode=args.mode)