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global.py DEPENDENCIES: BioPython, numpy OUTPUT: Optimal global alignment with affine gap penalties and maximum score. Output is formatted to print successive, matched portions of the alignment that fit comfortably on the Terminal screen. BUGS: No known major bugs. local_2.py DEPENDENCIES: BioPython, numpy OUTPUT: Optimal local alignment and maximum score. Output is formatted to print the whole aligned first string followed by the whole aligned second string (ie, the alignments match if the Terminal screen is wide enough). BUGS: No known major bugs.
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