add a config to ignore error in GET_NCBI_GENOME

fmalmeida · Sep 12, 2024 · fe48314 · fe48314
1 parent c405fb0
commit fe48314
Showing 1 changed file with 10 additions and 0 deletions.
diff --git a/conf/base.config b/conf/base.config
@@ -38,4 +38,14 @@ process {
         maxRetries    = 2
     }
 
+    // problematic module
+    withName: GET_NCBI_GENOME {
+        errorStrategy = { task.attempt > 4 ? 'retry' : 'ignore' }
+        maxRetries    = 2
+        maxErrors     = '-1'
+        cpus          = 2
+        memory        = 4.GB
+        time          = 2.h
+    }
+
 }