Bold extended figure labels

ecohealthalliance · Mar 21, 2017 · 0ba6e57 · 0ba6e57
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Showing 10 changed files with 4 additions and 2 deletions.
diff --git a/README.md b/README.md
@@ -86,6 +86,7 @@ This repository contains code and data to replicate analyses in Olival et. al.
 │   ├── calc-bat-special.R                             | Calculates significance of bat order effect in GAM
 │   ├── gen_host_spatial_data.R                        | Used for generating host zoogeographies shapefile
 │   ├── phylo-primates.Rmd                             | Examination of phylogenetic effects specific to primates
+│   ├── calc-pred-obs-correlation.R                    | Alternative measures of model fit
 │   └── zoonotic_dev_explained_w_offset.R              | For calculating deviance explained in models with offsets
 │
 ├── R/                                                 | Functions used in scripts and R markdown documents

diff --git a/README.txt b/README.txt
@@ -86,6 +86,7 @@ This repository contains code and data to replicate analyses in Olival et. al.
 │   ├── calc-bat-special.R                             | Calculates significance of bat order effect in GAM
 │   ├── gen_host_spatial_data.R                        | Used for generating host zoogeographies shapefile
 │   ├── phylo-primates.Rmd                             | Examination of phylogenetic effects specific to primates
+│   ├── calc-pred-obs-correlation.R                    | Alternative measures of model fit
 │   └── zoonotic_dev_explained_w_offset.R              | For calculating deviance explained in models with offsets
 │
 ├── R/                                                 | Functions used in scripts and R markdown documents

diff --git a/figures/ExtendedFigure03-ALL.png b/figures/ExtendedFigure03-ALL.png
diff --git a/figures/ExtendedFigure04-CARNIVORA.png b/figures/ExtendedFigure04-CARNIVORA.png
diff --git a/figures/ExtendedFigure05-CETARTIODACTYLA.png b/figures/ExtendedFigure05-CETARTIODACTYLA.png
diff --git a/figures/ExtendedFigure06-CHIROPTERA.png b/figures/ExtendedFigure06-CHIROPTERA.png
diff --git a/figures/ExtendedFigure07-PRIMATES.png b/figures/ExtendedFigure07-PRIMATES.png
diff --git a/figures/ExtendedFigure08-RODENTIA.png b/figures/ExtendedFigure08-RODENTIA.png
diff --git a/figures/Figure03-missing-zoo-maps.png b/figures/Figure03-missing-zoo-maps.png
diff --git a/scripts/08-make-Figure03-ExtendedFigs-stitch-maps.R b/scripts/08-make-Figure03-ExtendedFigs-stitch-maps.R
@@ -11,7 +11,7 @@ for(ORDER in hp3_orders) {
                                              ".png"))
 
   my_images <- lapply(image_files, image_read)
-  labeled_images <- mapply(image_annotate, image=my_images, text=letters[1:9], MoreArgs = list(font="Helvetica", location="+200+770", size=175), SIMPLIFY = FALSE)
+  labeled_images <- mapply(image_annotate, image=my_images, text=letters[1:9], MoreArgs = list(font="Helvetica-Bold", location="+200+770", size=175), SIMPLIFY = FALSE)
 
   comb_image <- image_append(stack=TRUE, image = c(
     image_append(c(labeled_images[[1]], labeled_images[[2]], labeled_images[[3]])),
@@ -21,7 +21,7 @@ for(ORDER in hp3_orders) {
 }
 
 missing_images <- lapply(list.files(P("figures", "maps/"), pattern =paste0("zoonoses_missing.png"), full.names = TRUE), image_read)
-labeled_images <- mapply(image_annotate, image=missing_images, text=letters[1:6], MoreArgs = list(font="Helvetica", location="+200+770", size=175), SIMPLIFY = FALSE)
+labeled_images <- mapply(image_annotate, image=missing_images, text=letters[1:6], MoreArgs = list(font="Helvetica-Bold", location="+200+770", size=175), SIMPLIFY = FALSE)
 comb_image2 <- image_append(stack=TRUE, image = c(
   image_append(c(labeled_images[[1]], labeled_images[[2]])),
   image_append(c(labeled_images[[3]], labeled_images[[4]])),