A Snakemake workflow for creating long read (Nanopore with NanoSim) and short read (Illumina with seqkit sliding --circular-genome and mason_simulate) testing data for ecDNA analysis workflows.
The usage of this workflow is described in the Snakemake Workflow Catalog.
If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) create-ecdna-testing-datasitory and its DOI (see above).