Merge pull request #99 from alessandratrapani/add_001170_demo

dandi · Dec 19, 2024 · 72d34ba · 72d34ba
2 parents 10c444a + b07eb8e
commit 72d34ba
Show file tree

Hide file tree

Showing 3 changed files with 23,368 additions and 0 deletions.
diff --git a/001170/ReimerLab/public_demo/001170_demo.ipynb b/001170/ReimerLab/public_demo/001170_demo.ipynb
diff --git a/001170/ReimerLab/public_demo/README.md b/001170/ReimerLab/public_demo/README.md
@@ -0,0 +1,21 @@
+# Mesoscale Two-Photon Calcium Imaging of Population Level Odor Responses from the Mouse Olfactory Bulb
+
+This example notebook demonstrates how to access the dataset published at [DANDI:001170](https://dandiarchive.org/dandiset/001170/draft).
+
+This dataset contains recordings of population level odor responses from the mouse OB with mesoscale two photon calcium 
+imaging.
+
+## Installing the dependencies
+
+```bash
+git clone https://github.com/dandi/example-notebooks
+cd example-notebooks/001170/ReimerLab
+conda env create --file environment.yml
+conda activate reimerlab_001170_demo
+```
+
+## Running the notebook
+
+```bash
+jupyter notebook 001170_demo.ipynb
+```
diff --git a/001170/ReimerLab/public_demo/environment.yml b/001170/ReimerLab/public_demo/environment.yml
@@ -0,0 +1,14 @@
+name: reimerlab_001170_demo
+channels:
+    - conda-forge
+dependencies:
+    - python==3.11
+    - ipywidgets
+    - pip
+    - pip:
+      - dandi
+      - jupyter
+      - matplotlib
+      - pynwb
+      - remfile
+      - plotly