-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
[DATALAD RUNCMD] Get latest validation reports with a summary
=== Do not change lines below === { "chain": [], "cmd": "duct dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^
- Loading branch information
DANDI Bot
committed
Nov 8, 2024
1 parent
86c38e4
commit aafff5f
Showing
20 changed files
with
4,554 additions
and
23 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
{"command": "dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO", "system": {"cpu_total": 4, "memory_total": 16757338112, "hostname": "fv-az1426-365", "uid": 1001, "user": "runner"}, "env": {}, "gpu": null, "duct_version": "0.8.0", "schema_version": "0.2.0", "execution_summary": {"exit_code": 0, "command": "dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO", "logs_prefix": ".duct/logs/2024.11.08T06.54.37-3489_", "wall_clock_time": 331.37311363220215, "peak_rss": 2881769472, "average_rss": 1584472151.1489356, "peak_vsz": 3320279040, "average_vsz": 1934657131.3799396, "peak_pmem": 17.1, "average_pmem": 9.402431610942244, "peak_pcpu": 99.0, "average_pcpu": 62.84103343465044, "num_samples": 329, "num_reports": 7, "start_time": 1731048877.074305, "end_time": 1731049208.4474187}, "output_paths": {"stdout": ".duct/logs/2024.11.08T06.54.37-3489_stdout", "stderr": ".duct/logs/2024.11.08T06.54.37-3489_stderr", "usage": ".duct/logs/2024.11.08T06.54.37-3489_usage.json", "info": ".duct/logs/2024.11.08T06.54.37-3489_info.json", "prefix": ".duct/logs/2024.11.08T06.54.37-3489_"}} |
Large diffs are not rendered by default.
Oops, something went wrong.
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,7 @@ | ||
{"timestamp": "2024-11-08T06:54:37.084136+00:00", "num_samples": 1, "processes": {"3492": {"pcpu": 0.0, "pmem": 0.0, "rss": 9306112, "vsz": 17244160, "timestamp": "2024-11-08T06:54:37.084136+00:00", "etime": "00:00", "stat": {"Rs": 1}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 0.0, "pcpu": 0.0, "rss": 9306112, "vsz": 17244160}, "averages": {"rss": 9306112, "vsz": 17244160, "pmem": 0.0, "pcpu": 0.0, "num_samples": 1}} | ||
{"timestamp": "2024-11-08T06:55:37.625021+00:00", "num_samples": 60, "processes": {"3492": {"pcpu": 99.0, "pmem": 4.0, "rss": 670388224, "vsz": 683573248, "timestamp": "2024-11-08T06:55:37.625021+00:00", "etime": "01:00", "stat": {"Rs": 43, "Ss": 17}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 4.0, "pcpu": 99.0, "rss": 670388224, "vsz": 683573248}, "averages": {"rss": 386899353.59999996, "vsz": 398861585.0666667, "pmem": 2.2599999999999993, "pcpu": 62.605, "num_samples": 60}} | ||
{"timestamp": "2024-11-08T06:56:37.130060+00:00", "num_samples": 59, "processes": {"3492": {"pcpu": 63.3, "pmem": 7.1, "rss": 1190346752, "vsz": 1623031808, "timestamp": "2024-11-08T06:56:37.130060+00:00", "etime": "02:00", "stat": {"Ss": 2, "Rs": 2, "Ssl": 18, "Rsl": 37}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 7.1, "pcpu": 63.3, "rss": 1190346752, "vsz": 1623031808}, "averages": {"rss": 936721876.6101692, "vsz": 1339816873.220339, "pmem": 5.540677966101695, "pcpu": 62.93559322033899, "num_samples": 59}} | ||
{"timestamp": "2024-11-08T06:57:37.644618+00:00", "num_samples": 60, "processes": {"3492": {"pcpu": 63.2, "pmem": 10.2, "rss": 1712787456, "vsz": 2149105664, "timestamp": "2024-11-08T06:57:37.644618+00:00", "etime": "03:00", "stat": {"Rsl": 41, "Ssl": 19}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 10.2, "pcpu": 63.2, "rss": 1712787456, "vsz": 2149105664}, "averages": {"rss": 1457897062.4, "vsz": 1892658653.866666, "pmem": 8.65, "pcpu": 62.879999999999995, "num_samples": 60}} | ||
{"timestamp": "2024-11-08T06:58:37.146110+00:00", "num_samples": 59, "processes": {"3492": {"pcpu": 63.3, "pmem": 13.4, "rss": 2256416768, "vsz": 2696339456, "timestamp": "2024-11-08T06:58:37.146110+00:00", "etime": "04:00", "stat": {"Ssl": 28, "Rsl": 31}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 13.4, "pcpu": 63.3, "rss": 2256416768, "vsz": 2696339456}, "averages": {"rss": 1988909507.2542367, "vsz": 2427373463.8644056, "pmem": 11.818644067796612, "pcpu": 63.06949152542373, "num_samples": 59}} | ||
{"timestamp": "2024-11-08T06:59:37.657318+00:00", "num_samples": 60, "processes": {"3492": {"pcpu": 63.2, "pmem": 16.7, "rss": 2812542976, "vsz": 3256569856, "timestamp": "2024-11-08T06:59:37.657318+00:00", "etime": "05:00", "stat": {"Rsl": 40, "Ssl": 20}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 16.7, "pcpu": 63.2, "rss": 2812542976, "vsz": 3256569856}, "averages": {"rss": 2529694993.0666676, "vsz": 2972053913.6000004, "pmem": 15.045000000000002, "pcpu": 63.11666666666667, "num_samples": 60}} | ||
{"timestamp": "2024-11-08T07:00:07.916270+00:00", "num_samples": 30, "processes": {"3492": {"pcpu": 65.7, "pmem": 17.1, "rss": 2881769472, "vsz": 3320279040, "timestamp": "2024-11-08T07:00:07.916270+00:00", "etime": "05:30", "stat": {"Rsl": 4, "Ssl": 3, "Rs": 23}, "cmd": "/opt/hostedtoolcache/Python/3.12.7/x64/bin/python /opt/hostedtoolcache/Python/3.12.7/x64/bin/dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO"}}, "totals": {"pmem": 17.1, "pcpu": 65.7, "rss": 2881769472, "vsz": 3320279040}, "averages": {"rss": 2873343180.799999, "vsz": 3280209100.8000007, "pmem": 17.063333333333333, "pcpu": 64.14333333333336, "num_samples": 30}} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,25 @@ | ||
[ | ||
{ | ||
"type": "jsonschema validation", | ||
"severity": "ERROR", | ||
"message": "{'name': 'Laquitaine, Steeve', 'email': 'laquitainesteeve@gmail.com', 'roleName': ['dcite:ContactPerson'], 'schemaKey': 'Person', 'affiliation': [], 'includeInCitation': True} is not of type 'string' in /contributor/0", | ||
"instance_index": 0, | ||
"instantiates": "Dandiset", | ||
"context": [], | ||
"source": { | ||
"message": "{'name': 'Laquitaine, Steeve', 'email': 'laquitainesteeve@gmail.com', 'roleName': ['dcite:ContactPerson'], 'schemaKey': 'Person', 'affiliation': [], 'includeInCitation': True} is not of type 'string'", | ||
"absolute_path": [ | ||
"contributor", | ||
0 | ||
], | ||
"absolute_schema_path": [ | ||
"properties", | ||
"contributor", | ||
"items", | ||
"type" | ||
], | ||
"validator": "type", | ||
"validator_value": "string" | ||
} | ||
} | ||
] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,22 @@ | ||
- context: [] | ||
instance_index: 0 | ||
instantiates: Dandiset | ||
message: '{''name'': ''Laquitaine, Steeve'', ''email'': ''laquitainesteeve@gmail.com'', | ||
''roleName'': [''dcite:ContactPerson''], ''schemaKey'': ''Person'', ''affiliation'': | ||
[], ''includeInCitation'': True} is not of type ''string'' in /contributor/0' | ||
severity: ERROR | ||
source: | ||
absolute_path: | ||
- contributor | ||
- 0 | ||
absolute_schema_path: | ||
- properties | ||
- contributor | ||
- items | ||
- type | ||
message: '{''name'': ''Laquitaine, Steeve'', ''email'': ''laquitainesteeve@gmail.com'', | ||
''roleName'': [''dcite:ContactPerson''], ''schemaKey'': ''Person'', ''affiliation'': | ||
[], ''includeInCitation'': True} is not of type ''string''' | ||
validator: type | ||
validator_value: string | ||
type: jsonschema validation |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,42 @@ | ||
{ | ||
"id": "DANDI:001250/draft", | ||
"url": "https://dandiarchive.org/dandiset/001250/draft", | ||
"name": "Spike sorting biases in a detailed model of dense large-scale recordings", | ||
"access": [ | ||
{ | ||
"status": "dandi:OpenAccess", | ||
"schemaKey": "AccessRequirements" | ||
} | ||
], | ||
"license": [ | ||
"spdx:CC-BY-4.0" | ||
], | ||
"version": "draft", | ||
"citation": "Laquitaine, Steeve (2024) Spike sorting biases in a detailed model of dense large-scale recordings (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/001250/draft", | ||
"schemaKey": "Dandiset", | ||
"identifier": "DANDI:001250", | ||
"repository": "https://dandiarchive.org", | ||
"contributor": [ | ||
{ | ||
"name": "Laquitaine, Steeve", | ||
"email": "laquitainesteeve@gmail.com", | ||
"roleName": [ | ||
"dcite:ContactPerson" | ||
], | ||
"schemaKey": "Person", | ||
"affiliation": [], | ||
"includeInCitation": true | ||
} | ||
], | ||
"dateCreated": "2024-11-07T14:18:15.892414+00:00", | ||
"description": "Dataset for the Spike sorting biases in a detailed model of dense large-scale recordings paper.", | ||
"assetsSummary": { | ||
"schemaKey": "AssetsSummary", | ||
"numberOfBytes": 0, | ||
"numberOfFiles": 0 | ||
}, | ||
"schemaVersion": "0.6.8", | ||
"manifestLocation": [ | ||
"https://api.dandiarchive.org/api/dandisets/001250/versions/draft/assets/" | ||
] | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,32 @@ | ||
access: | ||
- schemaKey: AccessRequirements | ||
status: dandi:OpenAccess | ||
assetsSummary: | ||
numberOfBytes: 0 | ||
numberOfFiles: 0 | ||
schemaKey: AssetsSummary | ||
citation: Laquitaine, Steeve (2024) Spike sorting biases in a detailed model of dense | ||
large-scale recordings (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/001250/draft | ||
contributor: | ||
- affiliation: [] | ||
email: laquitainesteeve@gmail.com | ||
includeInCitation: true | ||
name: Laquitaine, Steeve | ||
roleName: | ||
- dcite:ContactPerson | ||
schemaKey: Person | ||
dateCreated: '2024-11-07T14:18:15.892414+00:00' | ||
description: Dataset for the Spike sorting biases in a detailed model of dense large-scale | ||
recordings paper. | ||
id: DANDI:001250/draft | ||
identifier: DANDI:001250 | ||
license: | ||
- spdx:CC-BY-4.0 | ||
manifestLocation: | ||
- https://api.dandiarchive.org/api/dandisets/001250/versions/draft/assets/ | ||
name: Spike sorting biases in a detailed model of dense large-scale recordings | ||
repository: https://dandiarchive.org | ||
schemaKey: Dandiset | ||
schemaVersion: 0.6.8 | ||
url: https://dandiarchive.org/dandiset/001250/draft | ||
version: draft |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
[] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
[] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,25 @@ | ||
[ | ||
{ | ||
"type": "jsonschema validation", | ||
"severity": "ERROR", | ||
"message": "{'name': 'Wanat, Matthew', 'email': 'matthew.wanat@utsa.edu', 'roleName': ['dcite:ContactPerson'], 'schemaKey': 'Person', 'affiliation': [], 'includeInCitation': True} is not of type 'string' in /contributor/0", | ||
"instance_index": 0, | ||
"instantiates": "Dandiset", | ||
"context": [], | ||
"source": { | ||
"message": "{'name': 'Wanat, Matthew', 'email': 'matthew.wanat@utsa.edu', 'roleName': ['dcite:ContactPerson'], 'schemaKey': 'Person', 'affiliation': [], 'includeInCitation': True} is not of type 'string'", | ||
"absolute_path": [ | ||
"contributor", | ||
0 | ||
], | ||
"absolute_schema_path": [ | ||
"properties", | ||
"contributor", | ||
"items", | ||
"type" | ||
], | ||
"validator": "type", | ||
"validator_value": "string" | ||
} | ||
} | ||
] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,22 @@ | ||
- context: [] | ||
instance_index: 0 | ||
instantiates: Dandiset | ||
message: '{''name'': ''Wanat, Matthew'', ''email'': ''matthew.wanat@utsa.edu'', | ||
''roleName'': [''dcite:ContactPerson''], ''schemaKey'': ''Person'', ''affiliation'': | ||
[], ''includeInCitation'': True} is not of type ''string'' in /contributor/0' | ||
severity: ERROR | ||
source: | ||
absolute_path: | ||
- contributor | ||
- 0 | ||
absolute_schema_path: | ||
- properties | ||
- contributor | ||
- items | ||
- type | ||
message: '{''name'': ''Wanat, Matthew'', ''email'': ''matthew.wanat@utsa.edu'', | ||
''roleName'': [''dcite:ContactPerson''], ''schemaKey'': ''Person'', ''affiliation'': | ||
[], ''includeInCitation'': True} is not of type ''string''' | ||
validator: type | ||
validator_value: string | ||
type: jsonschema validation |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,42 @@ | ||
{ | ||
"id": "DANDI:001251/draft", | ||
"url": "https://dandiarchive.org/dandiset/001251/draft", | ||
"name": "MH133062", | ||
"access": [ | ||
{ | ||
"status": "dandi:OpenAccess", | ||
"schemaKey": "AccessRequirements" | ||
} | ||
], | ||
"license": [ | ||
"spdx:CC-BY-4.0" | ||
], | ||
"version": "draft", | ||
"citation": "Wanat, Matthew (2024) MH133062 (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/001251/draft", | ||
"schemaKey": "Dandiset", | ||
"identifier": "DANDI:001251", | ||
"repository": "https://dandiarchive.org", | ||
"contributor": [ | ||
{ | ||
"name": "Wanat, Matthew", | ||
"email": "matthew.wanat@utsa.edu", | ||
"roleName": [ | ||
"dcite:ContactPerson" | ||
], | ||
"schemaKey": "Person", | ||
"affiliation": [], | ||
"includeInCitation": true | ||
} | ||
], | ||
"dateCreated": "2024-11-07T17:17:32.850798+00:00", | ||
"description": "Neural signals controlling generalized deficits in motivation", | ||
"assetsSummary": { | ||
"schemaKey": "AssetsSummary", | ||
"numberOfBytes": 0, | ||
"numberOfFiles": 0 | ||
}, | ||
"schemaVersion": "0.6.8", | ||
"manifestLocation": [ | ||
"https://api.dandiarchive.org/api/dandisets/001251/versions/draft/assets/" | ||
] | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,31 @@ | ||
access: | ||
- schemaKey: AccessRequirements | ||
status: dandi:OpenAccess | ||
assetsSummary: | ||
numberOfBytes: 0 | ||
numberOfFiles: 0 | ||
schemaKey: AssetsSummary | ||
citation: Wanat, Matthew (2024) MH133062 (Version draft) [Data set]. DANDI archive. | ||
https://dandiarchive.org/dandiset/001251/draft | ||
contributor: | ||
- affiliation: [] | ||
email: matthew.wanat@utsa.edu | ||
includeInCitation: true | ||
name: Wanat, Matthew | ||
roleName: | ||
- dcite:ContactPerson | ||
schemaKey: Person | ||
dateCreated: '2024-11-07T17:17:32.850798+00:00' | ||
description: Neural signals controlling generalized deficits in motivation | ||
id: DANDI:001251/draft | ||
identifier: DANDI:001251 | ||
license: | ||
- spdx:CC-BY-4.0 | ||
manifestLocation: | ||
- https://api.dandiarchive.org/api/dandisets/001251/versions/draft/assets/ | ||
name: MH133062 | ||
repository: https://dandiarchive.org | ||
schemaKey: Dandiset | ||
schemaVersion: 0.6.8 | ||
url: https://dandiarchive.org/dandiset/001251/draft | ||
version: draft |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
[] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
[] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters