Fix rule of 3 and update version

czbiohub-sf · Apr 11, 2024 · a5f3d7a · a5f3d7a
1 parent 0e18600
commit a5f3d7a
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Showing 2 changed files with 3 additions and 5 deletions.
diff --git a/setup.py b/setup.py
@@ -33,7 +33,7 @@ def get_data_files(parent_dir):
 
 setup(
     name="stats_utils",
-    version="0.0.8",
+    version="0.0.9",
     description="Statistics utilities for remoscope and corresponding paper",
     long_description=readme(),
     url="https://github.com/czbiohub-sf/remo-stats-utils",

diff --git a/stats_utils/corrector.py b/stats_utils/corrector.py
@@ -126,14 +126,12 @@ def _get_res_from_counts(
 
         # Use rule of 3 if there are no parasites
         if parasites == 0:
-            rel_bound = 3 / corrected_counts[YOGO_CLASS_IDX_MAP["healthy"]]
+            abs_bound = 100 * 3 / corrected_counts[YOGO_CLASS_IDX_MAP["healthy"]]
         else:
             rel_bound = 1.69 * self._calc_parasitemia_rel_err(
                 corrected_counts, count_vars, parasites=parasites
             )
-
-        # Convert relative error into absolute error
-        abs_bound = rel_bound * parasitemia
+            abs_bound = rel_bound * parasitemia        
 
         if units_ul_out:
             return (