Performing Enrichment

The Enrichment Panel is added to the list of Table Panels for each network.

The default parameter values for any network that does not have the properties stored in it are as follows:

1. organism: Homo Sapiens
2. Column for fetching query names: name
3. user_threshold: 0.05
4. no_iea: true
5. significance_threshold_method : "g_SCS"

The user must follow the following steps:

1. We should open the Settings Panel to configure parameters to non-default values.

2. Once the nodes are selected you should run the enrichment analysis tool by clicking on the refresh button. [For understanding how the queries are configured look at the next section] This repopulates the table to store updated values. If no nodes are to be selected, you can still run the query according to the protocol defined below.

3. The table is populated with the relevant data output for the user to use.

4. This data can also be exported.

Query Construction Protocol

We follow the following protocol for populating the query:

1. If no nodes are selected, we have no background_nodes and all nodes in the network are queried.
2. If nodes are selected, all the nodes in the network are treated as the background_nodes for the query.