Remove gdal/terra and add sf dependencies.

cole-trapnell-lab · Feb 7, 2024 · e630409 · e630409
1 parent 2b17745
commit e630409
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Showing 3 changed files with 2 additions and 5 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: monocle3
 Title: Clustering, Differential Expression, and Trajectory Analysis for
     Single-Cell RNA-Seq
-Version: 1.3.4
+Version: 1.3.5
 Authors@R: c(
     person(given = "Hannah",
            family = "Pliner",
@@ -96,6 +96,7 @@ Imports:
     RcppHNSW (>= 0.3.0),
     Rtsne (>= 0.15),
     S4Vectors,
+    sf,
     shiny,
     slam (>= 0.1-45),
     spdep (>= 1.1-2),
@@ -105,7 +106,6 @@ Imports:
     SummarizedExperiment (>= 1.11.5),
     utils,
     uwot (>= 0.1.8),
-    terra (>= 1.4-17),
     tibble (>= 2.1.1),
     tidyr (>= 0.8.3),
     viridis (>= 0.5.1)

diff --git a/NAMESPACE b/NAMESPACE
@@ -107,6 +107,5 @@ importFrom(future,value)
 importFrom(igraph,dfs)
 importFrom(lme4,glmer)
 importFrom(plyr,".")
-importFrom(terra,gdal)
 importFrom(utils,packageVersion)
 useDynLib(monocle3, .registration = TRUE)
diff --git a/R/graph_test.R b/R/graph_test.R
@@ -104,8 +104,6 @@
 #'     pr_graph_test_res <- graph_test(cds, neighbor_graph="knn")
 #'   }
 #'
-#' @importFrom terra gdal
-#'
 #' @export
 graph_test <- function(cds,
                        neighbor_graph = c("knn", "principal_graph"),