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fix broken link
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@grahamegrieve
grahamegrieve committed Jan 21, 2021
1 parent 776cb65 commit 07a8431
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Showing 4 changed files with 276 additions and 8 deletions.
2 changes: 1 addition & 1 deletion source/diagnosticreport/diagnosticreport-examples-header.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ An example of a complex Micro Isolate and Sensitivities with 2 level nested Orga
<p/>
<p>
<strong>
<a href="diagnosticreport-example-lri.html">Micro Isolate and Sensitivities-2: </a>
<a href="bundle-lri-example.html">Micro Isolate and Sensitivities-2: </a>
</strong>
An collection Bundle showing an example of a complex Micro Isolate and Sensitivities based on the HL7 V2 Lab Reports Interface (LRI) example. This example has a single level nested Organism panels using the related Observation Structure. The following diagram is provided to help the reader navigate the nested structures.</p>
<img src="cands2.png" alt="Micro Isolate and Sensitivities-2 structure" width="800px"/>
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4 changes: 2 additions & 2 deletions tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/tools/publisher/PageProcessor.java
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Expand Up @@ -449,8 +449,8 @@ public PageProcessor(String tsServer) throws URISyntaxException, UcumException {
this.tsServer = tsServer;
}

// public final static String DEF_TS_SERVER = "http://tx.fhir.org/r4";
public final static String DEF_TS_SERVER = "http://local.fhir.org:960/r4";
public final static String DEF_TS_SERVER = "http://tx.fhir.org/r4";
// public final static String DEF_TS_SERVER = "http://local.fhir.org:960/r4";

public final static String WEB_PUB_NAME = "STU3";
public final static String CI_PUB_NAME = "Current Build";
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2 changes: 0 additions & 2 deletions tools/java/org.hl7.fhir.tools.core/src/org/hl7/fhir/tools/publisher/Publisher.java
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Expand Up @@ -438,8 +438,6 @@ public String getRef() {
private String validateId;

public static void main(String[] args) throws Exception {
//

Publisher pub = new Publisher();
pub.page = new PageProcessor(PageProcessor.DEF_TS_SERVER);
pub.isGenerate = !(args.length > 1 && hasParam(args, "-nogen"));
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276 changes: 273 additions & 3 deletions vscache/null.cache
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Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,8 @@ e: {
"experimental" : false,
"date" : "2017-02-15T16:33:00.000-07:00",
"expansion" : {
"identifier" : "urn:uuid:32056939-395b-4739-b765-04ff3294819d",
"timestamp" : "2021-01-20T05:58:18.992Z",
"identifier" : "urn:uuid:ae9b8761-5044-487d-b105-47915af49929",
"timestamp" : "2021-01-21T05:02:32.936Z",
"parameter" : [{
"name" : "expansion-source",
"valueString" : "ValueSet/action-participant-role"
Expand Down Expand Up @@ -63,10 +63,280 @@ e: {
},
{
"name" : "version",
"valueString" : "http://snomed.info/sct|http://snomed.info/sct/900000000000207008/version/20200131"
"valueString" : "http://snomed.info/sct|http://snomed.info/sct/900000000000207008/version/20200731"
}]
}
},
"error" : ""
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "self"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/subscriber-relationship"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"self\"); The code provided (#self) is not valid in the value set 'SubscriberRelationshipCodes' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "logic-library"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/library-type"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"logic-library\"); The code provided (#logic-library) is not valid in the value set 'LibraryType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "model-definition"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/library-type"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"model-definition\"); The code provided (#model-definition) is not valid in the value set 'LibraryType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "asset-collection"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/library-type"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"asset-collection\"); The code provided (#asset-collection) is not valid in the value set 'LibraryType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "proportion"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-scoring"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"proportion\"); The code provided (#proportion) is not valid in the value set 'MeasureScoring' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "process"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-type"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"process\"); The code provided (#process) is not valid in the value set 'MeasureType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "initial-population"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-population"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"initial-population\"); The code provided (#initial-population) is not valid in the value set 'MeasurePopulationType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "denominator"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-population"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"denominator\"); The code provided (#denominator) is not valid in the value set 'MeasurePopulationType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "denominator-exclusions"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-population"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"denominator-exclusions\"); The code provided (#denominator-exclusions) is not valid in the value set 'MeasurePopulationType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "numerator"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-population"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"numerator\"); The code provided (#numerator) is not valid in the value set 'MeasurePopulationType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "denominator-exclusion"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-population"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"denominator-exclusion\"); The code provided (#denominator-exclusion) is not valid in the value set 'MeasurePopulationType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "opportunity"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/composite-measure-scoring"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"opportunity\"); The code provided (#opportunity) is not valid in the value set 'CompositeMeasureScoring' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "cohort"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/measure-scoring"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"cohort\"); The code provided (#cohort) is not valid in the value set 'MeasureScoring' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "create"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/action-type"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"create\"); The code provided (#create) is not valid in the value set 'ActionType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------
{"code" : {
"coding" : [{
"code" : "clinical-protocol"
}]
}, "valueSet" :{
"resourceType" : "ValueSet",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/plan-definition-type"
}]
}
}, "lang":"null", "useServer":"true", "useClient":"true", "guessSystem":"false", "valueSetMode":"CHECK_MEMERSHIP_ONLY"}####
v: {
"display" : "",
"severity" : "error",
"error" : "The code system \"\" is not known (encountered paired with code = \"clinical-protocol\"); The code provided (#clinical-protocol) is not valid in the value set 'PlanDefinitionType' (from http://tx.fhir.org/r4)"
}
-------------------------------------------------------------------------------------

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