0.6.0

BREAKING

• N padding for out-of-range bases is not appended. See #120 (comment) and #121 for more information.
• cljam.io.protocols/{reader,writer}-path were renamed to cljam.io.protocols/{reader,writer}-url. Their return values are java.net.URL.

Added

• Add some extensions for FASTA format. #124
• Add many util functions for SAM/BAM files & split cljam.io.sam.util. #128
• Add FASTQ=>FASTA, SAM=>FASTQ conversions. #129
• Add some BED manipulation APIs. #131
• Support more source types. #132

Changed

• Remove N padding for out-of-range bases in read-sequence. #121
• Upgrade dependencies. #134

Fixed

• Fix some serialization functions. #122
• Fix parsing SAM header values containing ':'. #123
• Fix wrong padding of last bases in 2bit writer. #127
• Fix a bug in merging bed regions. #130
• Fix exec binary on Java 9+. #133