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@totakke totakke released this 20 Feb 11:17
· 1087 commits to master since this release
0.2.0
85237f3

BREAKING

From this release, ranges are represented as one-based closed intervals. For example,

{:chr "chr1", :start 1, :end 3}

represents the first three bases of chromosome 1.

Added

  • BED file reader/writer. #20
  • Read unplaced reads in BAM. #24

Changed

  • Improve performance of reading BAM files. #22
  • Replace candidate-message function with one in clj-sub-command.
  • Improve performance of reading vcf file. #29

Fixed

  • Fix a bug in BAM random reader. #21
  • Read multiple contigs in VCF meta info. #23 #25
  • Enable decompressUntilEOF of CompressorStreamFactory. #26
  • Fix bugs in mpileup. #27 #28
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