Rename test-resources' path

chrovis · Apr 25, 2014 · 8edaead · 8edaead
1 parent 9857b10
commit 8edaead
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Showing 15 changed files with 11 additions and 11 deletions.
diff --git a/test/resources/medium.bam → test-resources/medium.bam b/test/resources/medium.bam → test-resources/medium.bam
diff --git a/test/resources/medium.fa → test-resources/medium.fa b/test/resources/medium.fa → test-resources/medium.fa
diff --git a/test/resources/medium.fa.fai → test-resources/medium.fa.fai b/test/resources/medium.fa.fai → test-resources/medium.fa.fai
diff --git a/test/resources/t_core.pileup → test-resources/t_core.pileup b/test/resources/t_core.pileup → test-resources/t_core.pileup
diff --git a/test/resources/t_core.view → test-resources/t_core.view b/test/resources/t_core.view → test-resources/t_core.view
diff --git a/test/resources/test.bam → test-resources/test.bam b/test/resources/test.bam → test-resources/test.bam
diff --git a/test/resources/test.fa → test-resources/test.fa b/test/resources/test.fa → test-resources/test.fa
diff --git a/test/resources/test.fa.fai → test-resources/test.fa.fai b/test/resources/test.fa.fai → test-resources/test.fa.fai
diff --git a/test/resources/test.gtf.gz → test-resources/test.gtf.gz b/test/resources/test.gtf.gz → test-resources/test.gtf.gz
diff --git a/test/resources/test.gtf.gz.tbi → test-resources/test.gtf.gz.tbi b/test/resources/test.gtf.gz.tbi → test-resources/test.gtf.gz.tbi
diff --git a/test/resources/test.sam → test-resources/test.sam b/test/resources/test.sam → test-resources/test.sam
diff --git a/test/resources/test.sorted.bam → test-resources/test.sorted.bam b/test/resources/test.sorted.bam → test-resources/test.sorted.bam
diff --git a/test/resources/test.sorted.bam.bai → test-resources/test.sorted.bam.bai b/test/resources/test.sorted.bam.bai → test-resources/test.sorted.bam.bai
diff --git a/test/cljam/t_cli.clj b/test/cljam/t_cli.clj
@@ -69,7 +69,7 @@
   (fact "about pileup"
     ;; NB: "pileup" output format may change in future (maybe)
     (with-out-file temp-out (cli/pileup [test-sorted-bam-file])) => anything
-    ;(slurp temp-out) => (slurp "test/resources/t_cli.pileup")
+    ;(slurp temp-out) => (slurp "test-resources/t_cli.pileup")
     ))
 
 (with-state-changes [(before :facts (do (prepare-cache!)

diff --git a/test/cljam/t_common.clj b/test/cljam/t_common.clj
@@ -57,33 +57,33 @@
 
 ;; ### SAM files
 
-(def test-sam-file "test/resources/test.sam")
+(def test-sam-file "test-resources/test.sam")
 
 ;; ### BAM files
 
-(def test-bam-file "test/resources/test.bam")
-(def test-sorted-bam-file "test/resources/test.sorted.bam")
-(def medium-bam-file "test/resources/medium.bam")
+(def test-bam-file "test-resources/test.bam")
+(def test-sorted-bam-file "test-resources/test.sorted.bam")
+(def medium-bam-file "test-resources/medium.bam")
 (def large-bam-file (cavia/resource mycavia "large.bam"))
 
 ;; ### BAM index files
 
-(def test-bai-file "test/resources/test.sorted.bam.bai")
+(def test-bai-file "test-resources/test.sorted.bam.bai")
 (def test-large-bai-file (cavia/resource mycavia "large.bai"))
 
 ;; ### FASTA files
 
-(def test-fa-file  "test/resources/test.fa")
-(def medium-fa-file "test/resources/medium.fa")
+(def test-fa-file  "test-resources/test.fa")
+(def medium-fa-file "test-resources/medium.fa")
 
 ;; ### FASTA index files
 
-(def test-fai-file "test/resources/test.fa.fai")
-(def medium-fai-file "test/resources/medium.fa.fai")
+(def test-fai-file "test-resources/test.fa.fai")
+(def medium-fai-file "test-resources/medium.fa.fai")
 
 ;; ### TABIX files
 
-(def test-tabix-file "test/resources/test.gtf.gz.tbi")
+(def test-tabix-file "test-resources/test.gtf.gz.tbi")
 (def test-large-tabix-file (cavia/resource mycavia "large.tbi"))
 
 (def test-sam