Fix edit link instructions

_404.md

@@ -2,6 +2,6 @@
 
 This page does not exist anymore!
 
-Try going back to the [workshop homepage]() or the [bioinformatics.ca homepage]().
+Try going back to the [workshop homepage]() or the [bioinformatics.ca homepage](https://bioinformatics.ca/).
 
 You must update these pages for new workshops.

_output.yml

@@ -13,7 +13,15 @@ bookdown::gitbook:
         <img src="img/sponsors/Your-Sponsor-Here.svg" width=100%> <!--- replace the directory with your sponsor logo --->
 
         <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>
-    edit: https://github.com/USERNAME/REPO/edit/BRANCH/%s # REPLACE THIS (Julia still needs to configure with this a bit)
+
+    # YOU MUST REPLACE THE LINK BELOW - This is a link to your index.Rmd on your GitHub repo, which allows people to make suggestions
+    edit: https://github.com/cbw-dev/bookdown-template/blob/main/%s # Go to your index.Rmd page on GitHub, copy and paste the link to it, and add
+    # Steps:
+    # 1. Go to your index.Rmd page on GitHub, Copy and paste the link to it.
+    # 2. Copy and paste the link to it, excluding the "index.Rmd" ending.
+    # 3. Add "/%s" to the ending.
+    # 4. Replace the above link.
+
     download: ["pdf", "epub"]
   number_sections: false
 bookdown::pdf_book:

docs/404.html

@@ -6,7 +6,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>Error 404: This page does not exist. | [Name of Workshop][Year]</title>
   <meta name="description" content="CBW’s Bookdown Template for Workshops" />
-  <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.41.1 and GitBook 2.6.7" />
 
   <meta property="og:title" content="Error 404: This page does not exist. | [Name of Workshop][Year]" />
   <meta property="og:type" content="book" />
@@ -200,7 +200,7 @@ <h1>
 <div id="error-404-this-page-does-not-exist." class="section level1">
 <h1>Error 404: This page does not exist.</h1>
 <p>This page does not exist anymore!</p>
-<p>Try going back to the <a href>workshop homepage</a> or the <a href>bioinformatics.ca homepage</a>.</p>
+<p>Try going back to the <a href>workshop homepage</a> or the <a href="https://bioinformatics.ca/">bioinformatics.ca homepage</a>.</p>
 <p>You must update these pages for new workshops.</p>
 </div>
             </section>
@@ -240,7 +240,7 @@ <h1>Error 404: This page does not exist.</h1>
 "size": 2
 },
 "edit": {
-"link": "https://github.com/USERNAME/REPO/edit/BRANCH/_404.md",
+"link": "https://github.com/cbw-dev/bookdown-template/blob/main/_404.md",
 "text": "Edit"
 },
 "history": {

docs/course-schedule.html

@@ -6,7 +6,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>Course Schedule | [Name of Workshop][Year]</title>
   <meta name="description" content="CBW’s Bookdown Template for Workshops" />
-  <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.41.1 and GitBook 2.6.7" />
 
   <meta property="og:title" content="Course Schedule | [Name of Workshop][Year]" />
   <meta property="og:type" content="book" />
@@ -301,7 +301,7 @@ <h2>Class Photo<a href="course-schedule.html#class-photo" class="anchor-section"
 "size": 2
 },
 "edit": {
-"link": "https://github.com/USERNAME/REPO/edit/BRANCH/010-course-schedule.Rmd",
+"link": "https://github.com/cbw-dev/bookdown-template/blob/main/010-course-schedule.Rmd",
 "text": "Edit"
 },
 "history": {

docs/index.html

@@ -6,7 +6,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>[Name of Workshop][Year]</title>
   <meta name="description" content="CBW’s Bookdown Template for Workshops" />
-  <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.41.1 and GitBook 2.6.7" />
 
   <meta property="og:title" content="[Name of Workshop][Year]" />
   <meta property="og:type" content="book" />
@@ -245,7 +245,7 @@ <h1>Welcome<a href="index.html#welcome" class="anchor-section" aria-label="Ancho
 "size": 2
 },
 "edit": {
-"link": "https://github.com/USERNAME/REPO/edit/BRANCH/index.Rmd",
+"link": "https://github.com/cbw-dev/bookdown-template/blob/main/index.Rmd",
 "text": "Edit"
 },
 "history": {

docs/libs/gitbook-2.6.7/js/plugin-fontsettings.js

@@ -60,6 +60,13 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
         saveFontSettings();
     };
 
+    // Increase or decrease line spacing
+    function changeSpacing(e, inc = true) {
+        e.preventDefault();
+        inc ? fontState.spacing++ : (fontState.spacing > 10 && fontState.spacing--);
+        saveFontSettings();
+    }
+
     function update() {
         var $book = gitbook.state.$book;
 
@@ -74,6 +81,9 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
             $book[0].className = $book[0].className.replace(/\bcolor-theme-\S+/g, '');
             $book.addClass("color-theme-"+fontState.theme);
         }
+        var lineHeight = fontState.spacing / 10;
+        $book.find('section').css('line-height', lineHeight);
+        $('.font-settings .spacing-reduce').prop('disabled', lineHeight <= 1);
     };
 
     function init(config) {
@@ -87,7 +97,8 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
         fontState = gitbook.storage.get("fontState", {
             size: config.size || 2,
             family: FAMILY[config.family || "sans"],
-            theme: THEMES[config.theme || "white"]
+            theme: THEMES[config.theme || "white"],
+            spacing: config.spacing || 17,
         });
 
         update();
@@ -139,6 +150,18 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
                         text: 'Night',
                         onClick: _.partial(changeColorTheme, 2)
                     }
+
+                ],
+                [
+                    {
+                    className: 'spacing-reduce',
+                    text: 'Spacing -',
+                    onClick: e => changeSpacing(e, false)
+                    },
+                    {
+                    text: 'Spacing +',
+                    onClick: changeSpacing
+                    }
                 ]
             ]
         });

docs/module-1.html

@@ -6,7 +6,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>Module 1 | [Name of Workshop][Year]</title>
   <meta name="description" content="CBW’s Bookdown Template for Workshops" />
-  <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.41.1 and GitBook 2.6.7" />
 
   <meta property="og:title" content="Module 1 | [Name of Workshop][Year]" />
   <meta property="og:type" content="book" />
@@ -276,7 +276,7 @@ <h2>Lab<a href="module-1.html#lab" class="anchor-section" aria-label="Anchor lin
 "size": 2
 },
 "edit": {
-"link": "https://github.com/USERNAME/REPO/edit/BRANCH/020-module-1.Rmd",
+"link": "https://github.com/cbw-dev/bookdown-template/blob/main/020-module-1.Rmd",
 "text": "Edit"
 },
 "history": {

docs/module-2.html

@@ -6,7 +6,7 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>Module 2 | [Name of Workshop][Year]</title>
   <meta name="description" content="CBW’s Bookdown Template for Workshops" />
-  <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.41.1 and GitBook 2.6.7" />
 
   <meta property="og:title" content="Module 2 | [Name of Workshop][Year]" />
   <meta property="og:type" content="book" />
@@ -246,7 +246,7 @@ <h2>Lab<a href="module-2.html#lab-1" class="anchor-section" aria-label="Anchor l
 "size": 2
 },
 "edit": {
-"link": "https://github.com/USERNAME/REPO/edit/BRANCH/030-module-2.Rmd",
+"link": "https://github.com/cbw-dev/bookdown-template/blob/main/030-module-2.Rmd",
 "text": "Edit"
 },
 "history": {