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Merge branch 'dev' into deploy
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jonrkarr committed Mar 2, 2022
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2 changes: 1 addition & 1 deletion biosimulators_test_suite/_version.py
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__version__ = '0.1.85'
__version__ = '0.1.86'
6 changes: 4 additions & 2 deletions examples/README.md
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Expand Up @@ -50,7 +50,8 @@ The archives in this directory involve the following model formats:
| [SBML flux balance constraints package](http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/fbc) | SBML-fbc | [format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) |
| [SBML qualitative modeling package](http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/qual) | SBML-qual | [format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585) |
| [SBML MASS schema](https://masspy.readthedocs.io/en/stable/tutorials/reading_writing_models.html) | | |
| [XPP Language](http://www.math.pitt.edu/~bard/xpp/xpp.html) | | |
| [Virtual Cell Markup Language](https://vcell.org/) | VCML | |
| [XPP ODE format](http://www.math.pitt.edu/~bard/xpp/xpp.html) | | |


Note, more specific EDAM terms have SBML-fbc, SBML-qual, and other formats have been requested.
Expand Down Expand Up @@ -89,9 +90,10 @@ Below is information about the compatibility of a selection of archives.
| [Lorenz system](https://github.com/opencor/opencor/blob/master/models/tests/cellml/lorenz.cellml) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/cellml/Lorenz-system.omex)| [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/cellml/Lorenz-system/reports.h5) | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) | OpenCOR | [OpenCOR](https://biosimulators.org/simulators/opencor) |
| [Lotka-Volterra model (Smoldyn Team)](http://www.smoldyn.org/archive/examples/S8_reactions/lotvolt/lotvolt.txt) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/smoldyn/Lotka-Volterra.omex)| [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/smoldyn/Lotka-Volterra/reports.h5) | | spatial discrete ([0000294](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000294)) | Smoluchowski method ([0000057](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000057)) | Smoldyn | [Smoldyn](https://biosimulators.org/simulators/smoldyn) |
| [Parmar *BMC Syst Biol*](https://doi.org/10.1186/s12918-017-0431-3) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution.omex) | [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution/reports.h5) | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) | SBML ([format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585)) | [PySCeS](https://biosimulators.org/simulators/pysces), [tellurium](https://biosimulators.org/simulators/tellurium), [VCell](https://biosimulators.org/simulators/vcell) |
| [Powers *Pflugers Arch*](https://doi.org/10.1007/s00424-016-1893-7) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/vcml/Powers-Pflugers-Arch-2016-Drosophila-synaptic-strength.omex) | | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) | VCML | [VCell](https://biosimulators.org/simulators/vcell) |
| [Szymanska *J Theor Biol*](https://doi.org/10.1016/j.jtbi.2009.03.021) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis.omex) | [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Szymanska-J-Theor-Biol-2009-HSP-synthesis/reports.h5) | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODES ([0000496](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000496)) | SBML ([format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585)) | [AMICI](https://biosimulators.org/simulators/amici)
| [Tomida *EMBO J*](https://doi.org/10.1093/emboj/cdg381) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Tomida-EMBO-J-2003-NFAT-translocation.omex) | [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Tomida-EMBO-J-2003-NFAT-translocation/reports.h5) | [`.json`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Tomida-EMBO-J-2003-NFAT-translocation/Figure_3c.vg.json) | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | LSODA/LSODAR ([0000560](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000560)) | SBML ([format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585)) | [COPASI](https://biosimulators.org/simulators/copasi) |
| [Saglam toy gene regulatory network](https://github.com/biosimulators/Biosimulators_BioNetGen/blob/dev/tests/fixtures/test.bngl) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/bngl/test-bngl.omex) | [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/bngl/test-bngl/reports.h5) | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) | BNGL ([format_3972](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_3972)) | [BioNetGen](https://biosimulators.org/simulators/bionetgen) |
| [Varusai *Sci Rep*](https://doi.org/10.1038/s41598-017-18400-z) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML.omex) | [`.h5`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Varusai-Sci-Rep-2018-mTOR-signaling-LSODA-LSODAR-SBML/reports.h5) | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | LSODA/LSODAR ([0000560](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000560)) | SBML ([format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585)) | [COPASI](https://biosimulators.org/simulators/copasi) |
| [Vilar *PNAS*](https://doi.org/10.1073/pnas.092133899) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/sbml-core/Vilar-PNAS-2002-minimal-circardian-clock.omex) | | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)), non-spatial discrete ([0000295](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000295)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) and NRM ([0000027](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000027)) | SBML ([format_2585](https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http%3A%2F%2Fedamontology.org%2Fformat_2585)) | [VCell](https://biosimulators.org/simulators/vcell) |
| [Wu *Biochem Pharmacol*](https://doi.org/10.1016/j.bcp.2005.11.016) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/xpp/Wu-Biochem-Pharmacol-2006-pituitary-GH3-cells.omex) | | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) | XPP | [XPP](https://biosimulators.org/simulators/xpp) |
| [Wu *Biochem Pharmacol*](https://doi.org/10.1016/j.bcp.2005.11.016) | [`.omex`](https://github.com/biosimulators/Biosimulators_test_suite/raw/dev/examples/xpp/Wu-Biochem-Pharmacol-2006-pituitary-GH3-cells.omex) | | | non-spatial continuous ([0000293](https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http%3A%2F%2Fbiomodels.net%2FSBO%2FSBO_0000293)) | CVODE ([0000019](https://www.ebi.ac.uk/ols/ontologies/kisao/terms?iri=http%3A%2F%2Fwww.biomodels.net%2Fkisao%2FKISAO%23KISAO_0000019)) | XPP ODE | [XPP](https://biosimulators.org/simulators/xpp) |
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<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version2" xmlns:math="http://www.w3.org/1998/Math/MathML" xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core" xmlns:vcml="http://sourceforge.net/projects/vcell/vcml" level="1" version="2">
<!--This file was generated by jlibsedml, version 2.2.3.-->
<listOfSimulations>
<uniformTimeCourse id="Simulation1" name="Simulation1" initialTime="0.0" outputStartTime="0.0" outputEndTime="0.2" numberOfPoints="5000">
<notes>
<p xmlns="http://www.w3.org/1999/xhtml">Actual Solver Name : 'Combined Stiff Solver (IDA/CVODE)'.</p>
</notes>
<algorithm kisaoID="KISAO:0000019">
<listOfAlgorithmParameters>
<algorithmParameter kisaoID="KISAO:0000211" value="1.0E-9" />
<algorithmParameter kisaoID="KISAO:0000209" value="1.0E-9" />
<algorithmParameter kisaoID="KISAO:0000467" value="1.0E-4" />
</listOfAlgorithmParameters>
</algorithm>
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="minepsp" name="minepsp" language="urn:sedml:language:vcml" source="biomodel_100596964.vcml" />
</listOfModels>
<listOfTasks>
<task id="tsk_0_0" name="Simulation1" modelReference="minepsp" simulationReference="Simulation1" />
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="time_tsk_0_0" name="time_tsk_0_0">
<listOfVariables>
<variable id="t_tsk_0_0" name="t" taskReference="tsk_0_0" symbol="urn:sedml:symbol:time" />
</listOfVariables>
<math:math>
<math:ci>t_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dataGen_tsk_0_0_GluR_plasma_membrane" name="dataGen_tsk_0_0_GluR_plasma_membrane">
<listOfVariables>
<variable id="GluR_plasma_membrane_tsk_0_0" name="GluR_plasma_membrane" taskReference="tsk_0_0" target="/vcml:vcml/vcml:BioModel/vcml:Model/vcml:LocalizedCompound[@Name='GluR_plasma_membrane']" />
</listOfVariables>
<math:math>
<math:ci>GluR_plasma_membrane_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dataGen_tsk_0_0_Leak_plasma_membrane" name="dataGen_tsk_0_0_Leak_plasma_membrane">
<listOfVariables>
<variable id="Leak_plasma_membrane_tsk_0_0" name="Leak_plasma_membrane" taskReference="tsk_0_0" target="/vcml:vcml/vcml:BioModel/vcml:Model/vcml:LocalizedCompound[@Name='Leak_plasma_membrane']" />
</listOfVariables>
<math:math>
<math:ci>Leak_plasma_membrane_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dataGen_tsk_0_0_ion_muscle" name="dataGen_tsk_0_0_ion_muscle">
<listOfVariables>
<variable id="ion_muscle_tsk_0_0" name="ion_muscle" taskReference="tsk_0_0" target="/vcml:vcml/vcml:BioModel/vcml:Model/vcml:LocalizedCompound[@Name='ion_muscle']" />
</listOfVariables>
<math:math>
<math:ci>ion_muscle_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dataGen_tsk_0_0_Sion_Extracellular" name="dataGen_tsk_0_0_Sion_Extracellular">
<listOfVariables>
<variable id="Sion_Extracellular_tsk_0_0" name="Sion_Extracellular" taskReference="tsk_0_0" target="/vcml:vcml/vcml:BioModel/vcml:Model/vcml:LocalizedCompound[@Name='Sion_Extracellular']" />
</listOfVariables>
<math:math>
<math:ci>Sion_Extracellular_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dataGen_tsk_0_0_ion_Extracellular" name="dataGen_tsk_0_0_ion_Extracellular">
<listOfVariables>
<variable id="ion_Extracellular_tsk_0_0" name="ion_Extracellular" taskReference="tsk_0_0" target="/vcml:vcml/vcml:BioModel/vcml:Model/vcml:LocalizedCompound[@Name='ion_Extracellular']" />
</listOfVariables>
<math:math>
<math:ci>ion_Extracellular_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dataGen_tsk_0_0_Sion_muscle" name="dataGen_tsk_0_0_Sion_muscle">
<listOfVariables>
<variable id="Sion_muscle_tsk_0_0" name="Sion_muscle" taskReference="tsk_0_0" target="/vcml:vcml/vcml:BioModel/vcml:Model/vcml:LocalizedCompound[@Name='Sion_muscle']" />
</listOfVariables>
<math:math>
<math:ci>Sion_muscle_tsk_0_0</math:ci>
</math:math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot2d_Simulation1" name="compartment_Simulation1_plot">
<notes>
<p xmlns="http://www.w3.org/1999/xhtml">Plot of all variables and output functions from application 'compartment' ; simulation 'Simulation1' in VCell model</p>
</notes>
<listOfCurves>
<curve id="curve_plot2d_Simulation1_dataGen_tsk_0_0_GluR_plasma_membrane" name="dataGen_tsk_0_0_GluR_plasma_membrane" logX="false" logY="false" xDataReference="time_tsk_0_0" yDataReference="dataGen_tsk_0_0_GluR_plasma_membrane" />
<curve id="curve_plot2d_Simulation1_dataGen_tsk_0_0_Leak_plasma_membrane" name="dataGen_tsk_0_0_Leak_plasma_membrane" logX="false" logY="false" xDataReference="time_tsk_0_0" yDataReference="dataGen_tsk_0_0_Leak_plasma_membrane" />
<curve id="curve_plot2d_Simulation1_dataGen_tsk_0_0_ion_muscle" name="dataGen_tsk_0_0_ion_muscle" logX="false" logY="false" xDataReference="time_tsk_0_0" yDataReference="dataGen_tsk_0_0_ion_muscle" />
<curve id="curve_plot2d_Simulation1_dataGen_tsk_0_0_Sion_Extracellular" name="dataGen_tsk_0_0_Sion_Extracellular" logX="false" logY="false" xDataReference="time_tsk_0_0" yDataReference="dataGen_tsk_0_0_Sion_Extracellular" />
<curve id="curve_plot2d_Simulation1_dataGen_tsk_0_0_ion_Extracellular" name="dataGen_tsk_0_0_ion_Extracellular" logX="false" logY="false" xDataReference="time_tsk_0_0" yDataReference="dataGen_tsk_0_0_ion_Extracellular" />
<curve id="curve_plot2d_Simulation1_dataGen_tsk_0_0_Sion_muscle" name="dataGen_tsk_0_0_Sion_muscle" logX="false" logY="false" xDataReference="time_tsk_0_0" yDataReference="dataGen_tsk_0_0_Sion_muscle" />
</listOfCurves>
</plot2D>
<report id="report_Simulation1" name="compartment_Simulation1_plot">
<notes>
<p xmlns="http://www.w3.org/1999/xhtml">Report of all variables and output functions from application 'compartment' ; simulation 'Simulation1' in VCell model</p>
</notes>
<listOfDataSets>
<dataSet dataReference="time_tsk_0_0" id="__data_set__plot2d_Simulation1time_tsk_0_0" name="time" label="time_tsk_0_0" />
<dataSet dataReference="dataGen_tsk_0_0_GluR_plasma_membrane" id="__data_set__plot2d_Simulation1dataGen_tsk_0_0_GluR_plasma_membrane" name="dataGen_tsk_0_0_GluR_plasma_membrane" label="dataGen_tsk_0_0_GluR_plasma_membrane" />
<dataSet dataReference="dataGen_tsk_0_0_Leak_plasma_membrane" id="__data_set__plot2d_Simulation1dataGen_tsk_0_0_Leak_plasma_membrane" name="dataGen_tsk_0_0_Leak_plasma_membrane" label="dataGen_tsk_0_0_Leak_plasma_membrane" />
<dataSet dataReference="dataGen_tsk_0_0_ion_muscle" id="__data_set__plot2d_Simulation1dataGen_tsk_0_0_ion_muscle" name="dataGen_tsk_0_0_ion_muscle" label="dataGen_tsk_0_0_ion_muscle" />
<dataSet dataReference="dataGen_tsk_0_0_Sion_Extracellular" id="__data_set__plot2d_Simulation1dataGen_tsk_0_0_Sion_Extracellular" name="dataGen_tsk_0_0_Sion_Extracellular" label="dataGen_tsk_0_0_Sion_Extracellular" />
<dataSet dataReference="dataGen_tsk_0_0_ion_Extracellular" id="__data_set__plot2d_Simulation1dataGen_tsk_0_0_ion_Extracellular" name="dataGen_tsk_0_0_ion_Extracellular" label="dataGen_tsk_0_0_ion_Extracellular" />
<dataSet dataReference="dataGen_tsk_0_0_Sion_muscle" id="__data_set__plot2d_Simulation1dataGen_tsk_0_0_Sion_muscle" name="dataGen_tsk_0_0_Sion_muscle" label="dataGen_tsk_0_0_Sion_muscle" />
</listOfDataSets>
</report>
</listOfOutputs>
</sedML>

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{
"name": "Regulation of quantal currents determines synaptic strength at neuromuscular synapses in larval Drosophila",
"filename": "Powers-Pflugers-Arch-2016-Drosophila-synaptic-strength.omex",
"taskRequirements": [
{
"modelFormat": "format_9000",
"modelFormatFeatures": [],
"simulationAlgorithm": "KISAO_0000019"
}
],
"skippedSimulators": [],
"expectedReports": [
{
"id": "biomodel_100596964.sedml/report_Simulation1",
"dataSets": [
{
"id": "__data_set__plot2d_Simulation1time_tsk_0_0",
"label": "time_tsk_0_0"
},
{
"id": "__data_set__plot2d_Simulation1dataGen_tsk_0_0_GluR_plasma_membrane",
"label": "dataGen_tsk_0_0_GluR_plasma_membrane"
},
{
"id": "__data_set__plot2d_Simulation1dataGen_tsk_0_0_Leak_plasma_membrane",
"label": "dataGen_tsk_0_0_Leak_plasma_membrane"
},
{
"id": "__data_set__plot2d_Simulation1dataGen_tsk_0_0_ion_muscle",
"label": "dataGen_tsk_0_0_ion_muscle"
},
{
"id": "__data_set__plot2d_Simulation1dataGen_tsk_0_0_Sion_Extracellular",
"label": "dataGen_tsk_0_0_Sion_Extracellular"
},
{
"id": "__data_set__plot2d_Simulation1dataGen_tsk_0_0_ion_Extracellular",
"label": "dataGen_tsk_0_0_ion_Extracellular"
},
{
"id": "__data_set__plot2d_Simulation1dataGen_tsk_0_0_Sion_muscle",
"label": "dataGen_tsk_0_0_Sion_muscle"
}
],
"points": [
5001
],
"values": [
{
"id": "__data_set__plot2d_Simulation1time_tsk_0_0",
"label": "time_tsk_0_0",
"value": {
"0": 0,
"5000": 0.2
}
}
]
}
],
"expectedPlots": [
{
"id": "biomodel_100596964.sedml/plot2d_Simulation1"
}
],
"runtimeFailureAlertType": "exception",
"author": "Andrew S. Powers, Jeffrey Grizzaffi, Richard Ribchester & Gregory A. Lnenicka",
"identifiers": [
{
"namespace": "url",
"id": "http://identifiers.org/vcell:100596964",
"url": "https://identifiers.org/vcell:100596964"
}
]
}
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