align all yaml file extensions, organize hack folder

biosimulations · Nov 18, 2021 · 4466956 · 4466956
1 parent 64ad8e1
commit 4466956
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Showing 38 changed files with 17 additions and 49 deletions.
diff --git a/base/apps/hsds-service.yaml b/base/apps/hsds-service.yaml
@@ -124,10 +124,10 @@ spec:
               mountPath: "/config/password/passwd.txt"
               subPath: "passwd.txt"
             - name: config
-              mountPath: "/config/config.yml"
+              mountPath: "/config/config.yml" #must be yml
               subPath: config.yaml
             - name: override
-              mountPath: "/config/override.yml"
+              mountPath: "/config/override.yml" #must be yml
               subPath: override.yaml
       volumes:
         - name: accounts

diff --git a/config/dev/kustomization.yml → config/dev/kustomization.yaml b/config/dev/kustomization.yml → config/dev/kustomization.yaml
diff --git a/config/prod/kustomization.yml → config/prod/kustomization.yaml b/config/prod/kustomization.yml → config/prod/kustomization.yaml
diff --git a/.../mongodb-kubernetes-operator/operator.yml → ...mongodb-kubernetes-operator/operator.yaml b/.../mongodb-kubernetes-operator/operator.yml → ...mongodb-kubernetes-operator/operator.yaml
diff --git a/...stom/mongodb-kubernetes-operator/role.yml → ...tom/mongodb-kubernetes-operator/role.yaml b/...stom/mongodb-kubernetes-operator/role.yml → ...tom/mongodb-kubernetes-operator/role.yaml
diff --git a/...godb-kubernetes-operator/role_binding.yml → ...odb-kubernetes-operator/role_binding.yaml b/...godb-kubernetes-operator/role_binding.yml → ...odb-kubernetes-operator/role_binding.yaml
diff --git a/...b-kubernetes-operator/service_account.yml → ...-kubernetes-operator/service_account.yaml b/...b-kubernetes-operator/service_account.yml → ...-kubernetes-operator/service_account.yaml
diff --git a/hack/class.yml → hack/hpc/class.yaml b/hack/class.yml → hack/hpc/class.yaml
diff --git a/hack/hpc/class.yml b/hack/hpc/class.yml
diff --git a/hack/hpc/deployment.yml → hack/hpc/deployment.yaml b/hack/hpc/deployment.yml → hack/hpc/deployment.yaml
diff --git a/hack/hpc-nfs-claim.yaml → hack/hpc/hpc-nfs-claim.yaml b/hack/hpc-nfs-claim.yaml → hack/hpc/hpc-nfs-claim.yaml
diff --git a/hack/hpc-nfs-class.yml → hack/hpc/hpc-nfs-class.yaml b/hack/hpc-nfs-class.yml → hack/hpc/hpc-nfs-class.yaml
diff --git a/hack/hpc-nfs-provisioner.yml → hack/hpc/hpc-nfs-provisioner.yaml b/hack/hpc-nfs-provisioner.yml → hack/hpc/hpc-nfs-provisioner.yaml
diff --git a/hack/hpc-nfs-web-rc.yaml → hack/hpc/hpc-nfs-web-rc.yaml b/hack/hpc-nfs-web-rc.yaml → hack/hpc/hpc-nfs-web-rc.yaml
diff --git a/hack/hpc-nfs-web-service.yml → hack/hpc/hpc-nfs-web-service.yaml b/hack/hpc-nfs-web-service.yml → hack/hpc/hpc-nfs-web-service.yaml
diff --git a/hack/hpc/rbac.yml → hack/hpc/rbac.yaml b/hack/hpc/rbac.yml → hack/hpc/rbac.yaml
diff --git a/hack/mongo_enterprise.yml → hack/mongo_enterprise.yaml b/hack/mongo_enterprise.yml → hack/mongo_enterprise.yaml
diff --git a/hack/nats-jetstream-controller/crds.yml → hack/nats-jetstream-controller/crds.yaml b/hack/nats-jetstream-controller/crds.yml → hack/nats-jetstream-controller/crds.yaml
diff --git a/hack/nats-jetstream-controller/deploy.yml → hack/nats-jetstream-controller/deploy.yaml b/hack/nats-jetstream-controller/deploy.yml → hack/nats-jetstream-controller/deploy.yaml
diff --git a/...ts-jetstream-controller/kustomization.yml → ...s-jetstream-controller/kustomization.yaml b/...ts-jetstream-controller/kustomization.yml → ...s-jetstream-controller/kustomization.yaml
@@ -1,6 +1,6 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-  - crds.yml
-  - rbac.yml
-  - deploy.yml
+  - crds.yaml
+  - rbac.yaml
+  - deploy.yaml
diff --git a/hack/nats-jetstream-controller/rbac.yml → hack/nats-jetstream-controller/rbac.yaml b/hack/nats-jetstream-controller/rbac.yml → hack/nats-jetstream-controller/rbac.yaml
diff --git a/hack/nats.yml → hack/nats.yaml b/hack/nats.yml → hack/nats.yaml
diff --git a/hack/pv_claim_local.yml b/hack/pv_claim_local.yml
diff --git a/hack/pv_volume_local.yml b/hack/pv_volume_local.yml
diff --git a/overlays/deploy/biosimulations-ingress.yml → overlays/deploy/biosimulations-ingress.yaml b/overlays/deploy/biosimulations-ingress.yml → overlays/deploy/biosimulations-ingress.yaml
diff --git a/overlays/deploy/biosimulators-ingress.yml → overlays/deploy/biosimulators-ingress.yaml b/overlays/deploy/biosimulators-ingress.yml → overlays/deploy/biosimulators-ingress.yaml
diff --git a/overlays/deploy/kustomization.yml → overlays/deploy/kustomization.yaml b/overlays/deploy/kustomization.yml → overlays/deploy/kustomization.yaml
@@ -40,13 +40,13 @@ replicas:
   name: combine-api
 #Use the prod version of the secrets and ingress
 resources:
-- prod.yml
+- prod.yaml
 - ../../secrets/prod
 - ../../config/prod
-- biosimulations-ingress.yml
-- biosimulators-ingress.yml
+- biosimulations-ingress.yaml
+- biosimulators-ingress.yaml
 - ../../base
 
 
 patchesStrategicMerge:
-- resources.yml
+- resources.yaml
diff --git a/overlays/deploy/prod.yml → overlays/deploy/prod.yaml b/overlays/deploy/prod.yml → overlays/deploy/prod.yaml
diff --git a/overlays/deploy/resources.yml → overlays/deploy/resources.yaml b/overlays/deploy/resources.yml → overlays/deploy/resources.yaml
diff --git a/overlays/dev/api-ingress.yml → overlays/dev/api-ingress.yaml b/overlays/dev/api-ingress.yml → overlays/dev/api-ingress.yaml
diff --git a/overlays/dev/biosimulators-ingress.yml → overlays/dev/biosimulators-ingress.yaml b/overlays/dev/biosimulators-ingress.yml → overlays/dev/biosimulators-ingress.yaml
diff --git a/overlays/dev/combine-ingress.yml → overlays/dev/combine-ingress.yaml b/overlays/dev/combine-ingress.yml → overlays/dev/combine-ingress.yaml
diff --git a/overlays/dev/dev.yml → overlays/dev/dev.yaml b/overlays/dev/dev.yml → overlays/dev/dev.yaml
diff --git a/overlays/dev/hsds-ingress.yml → overlays/dev/hsds-ingress.yaml b/overlays/dev/hsds-ingress.yml → overlays/dev/hsds-ingress.yaml
diff --git a/overlays/dev/kustomization.yml → overlays/dev/kustomization.yaml b/overlays/dev/kustomization.yml → overlays/dev/kustomization.yaml
@@ -31,7 +31,7 @@ replicas:
   name: api
 - count: 2
   name: dispatch-service
-- count: 1
+- count: 5
   name: hsds
 - count: 2
   name: mail-service
@@ -42,14 +42,14 @@ replicas:
 
 #Use the development version of the secrets and ingress
 resources:
-- dev.yml
-- combine-ingress.yml
-- api-ingress.yml
-- hsds-ingress.yml
-- biosimulators-ingress.yml
+- dev.yaml
+- combine-ingress.yaml
+- api-ingress.yaml
+- hsds-ingress.yaml
+- biosimulators-ingress.yaml
 - ../../secrets/dev
 - ../../config/dev
 - ../../base
 
 patchesStrategicMerge:
-- resources.yml
+- resources.yaml
diff --git a/overlays/dev/nats-js.yml → overlays/dev/nats-js.yaml b/overlays/dev/nats-js.yml → overlays/dev/nats-js.yaml
diff --git a/overlays/dev/resources.yml → overlays/dev/resources.yaml b/overlays/dev/resources.yml → overlays/dev/resources.yaml
diff --git a/secrets b/secrets