Clarify Project D Day 2 slides; give answers for the hands-on exercises

billdenney · Nov 20, 2023 · 8f03df2 · 8f03df2
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Showing 3 changed files with 10 additions and 6 deletions.
diff --git a/courses/2023-10-18-Project D-training-session-hands-on-hints.Rmd b/courses/2023-10-18-Project D-training-session-hands-on-hints.Rmd
@@ -209,9 +209,10 @@ as AUClast, Cmax, and Tmax.
 
 ```{r eval=FALSE, echo=FALSE}
 library(PKNCA)
+library(tidyverse)
 
-d_conc <- read.csv("Hands-on 1_Whale PK/whale_conc.csv")
-d_dose <- read.csv("Hands-on 1_Whale PK/whale_dose.csv")
+d_conc <- read.csv("2023-10-18-Project D files/Hands-on 1_Whale PK/whale_conc.csv")
+d_dose <- read.csv("2023-10-18-Project D files/Hands-on 1_Whale PK/whale_dose.csv")
 head(d_conc)
 head(d_dose)
 
@@ -292,9 +293,12 @@ o_conc <- PKNCAconc(data = d_conc, conc~time|Subject)
 # with the correct arguments.
 d_intervals <-
   data.frame(
-    start =,
-    end =,
+    start = c(0, 120),
+    end = c(24, 144),
     # insert the parameters to calculate here
+    aucint.inf.obs = TRUE,
+    cmax = TRUE,
+    tmax = TRUE
   )
 o_data <- PKNCAdata(o_conc, intervals = d_intervals)
 o_nca <- pk.nca(o_data)

diff --git a/courses/2023-10-18-Project D-training-session.Rmd b/courses/2023-10-18-Project D-training-session.Rmd
@@ -923,7 +923,7 @@ d_multidose_single_analyte <-
 # write_csv(x = d_multidose_single_analyte, file = "2023-10-18-Project D files/Hands-on 2_Multiple dosing/multidose.csv")
 ```
 
-# Backup information
+# Day 2 of training session
 
 # Control your data
 

diff --git a/courses/2023-10-18-Project-D-training-session.html b/courses/2023-10-18-Project-D-training-session.html
@@ -4232,7 +4232,7 @@ <h1 data-config-title><!-- populated from slide_config.json --></h1>
 <li>Calculate NCA parameters of AUC<sub>int</sub>, C<sub>max</sub>, and T<sub>max</sub> on Day 1 and Day 6. And, calculate half-life on Day 6.</li>
 </ol>
 
-</article></slide><slide class="segue dark nobackground level1"><hgroup class = 'auto-fadein'><h2>Backup information</h2></hgroup><article  id="backup-information">
+</article></slide><slide class="segue dark nobackground level1"><hgroup class = 'auto-fadein'><h2>Day 2 of training session</h2></hgroup><article  id="day-2-of-training-session">
 
 </article></slide><slide class="segue dark nobackground level1"><hgroup class = 'auto-fadein'><h2>Control your data</h2></hgroup><article  id="control-your-data">